Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99923 * 2 1 4 4 H 1.48510 * 109.47249 * 240.00549 * 3 2 1 5 5 H 1.48497 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47318 * 120.00679 * 3 2 1 7 7 C 1.37879 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.35935 * 116.99621 * 179.97438 * 10 9 7 12 12 N 1.30521 * 126.16248 * 0.02967 * 11 10 9 13 13 N 1.39853 * 110.05762 * 179.97438 * 12 11 10 14 14 H 0.97004 * 125.41969 * 180.02562 * 13 12 11 15 15 C 1.37045 * 109.17140 * 359.97438 * 13 12 11 16 16 C 1.39302 * 133.80468 * 179.97438 * 15 13 12 17 17 C 1.36596 * 119.84768 * 179.33849 * 16 15 13 18 18 C 1.38964 * 120.80560 * 0.56444 * 17 16 15 19 19 C 1.36490 * 120.61858 * 359.65976 * 18 17 16 20 20 C 1.39852 * 119.64119 * 359.97354 * 19 18 17 21 21 H 0.96998 * 119.99843 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.46943 * 60.00185 * 9 7 2 23 23 H 1.08999 * 109.47285 * 300.00325 * 9 7 2 24 24 H 1.08002 * 120.07986 * 0.02565 * 16 15 13 25 25 H 1.07999 * 119.59823 * 180.20481 * 17 16 15 26 26 H 1.07998 * 119.68872 * 179.63296 * 18 17 16 27 27 H 1.07999 * 120.18010 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.6601 -4.8415 0.0000 12 7 0.3919 -5.1503 0.0000 13 7 0.2368 -6.5402 0.0001 14 1 -0.6112 -7.0113 -0.0003 15 6 1.4733 -7.1311 -0.0005 16 6 1.9099 -8.4539 -0.0002 17 6 3.2480 -8.7282 -0.0146 18 6 4.1848 -7.7019 -0.0178 19 6 3.7860 -6.3966 -0.0136 20 6 2.4215 -6.0903 -0.0065 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 1.1921 -9.2609 0.0002 25 1 3.5819 -9.7553 -0.0176 26 1 5.2384 -7.9394 -0.0232 27 1 4.5202 -5.6045 -0.0157 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997099.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = 19.599358 kcal Electronic energy + Delta-G solvation = -13604.672624 eV Core-core repulsion = 11135.084791 eV Total energy + Delta-G solvation = -2469.587833 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.26163 -39.38164 -37.83574 -35.11903 -32.91502 -30.82290 -30.39750 -29.55351 -25.34902 -23.86574 -23.01812 -22.12708 -19.16685 -18.67894 -18.08388 -17.35631 -16.99991 -16.55868 -16.06354 -15.24390 -15.19335 -14.86581 -14.60561 -13.85484 -13.11869 -13.09918 -12.79230 -12.75590 -12.30079 -12.29347 -11.98452 -11.68373 -11.50419 -10.85260 -10.49938 -9.70900 -8.75252 -8.41531 -6.58746 0.02107 0.59013 1.37587 1.44273 1.51159 1.51792 1.64243 2.22743 2.49246 2.87444 2.92594 3.62752 3.74651 4.10176 4.19198 4.51363 4.52982 4.62748 4.84097 4.89823 5.09201 5.23491 5.43801 5.53064 5.63219 5.71344 5.96820 6.34024 6.45620 6.61407 6.71885 7.13122 8.70923 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.058357 B = 0.006211 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.694055 B = 4507.003565 C = 4971.547239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.996 3.004 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.562 4.562 8 H 0.074 0.926 9 C 0.220 3.780 10 O -0.304 6.304 11 C 0.262 3.738 12 N -0.345 5.345 13 N -0.495 5.495 14 H 0.454 0.546 15 C 0.138 3.862 16 C -0.148 4.148 17 C -0.052 4.052 18 C -0.159 4.159 19 C -0.049 4.049 20 C -0.209 4.209 21 H 0.275 0.725 22 H -0.003 1.003 23 H -0.003 1.003 24 H 0.163 0.837 25 H 0.175 0.825 26 H 0.159 0.841 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -17.587 -0.031 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.599 4.599 8 H 0.092 0.908 9 C 0.147 3.853 10 O -0.206 6.206 11 C 0.047 3.953 12 N -0.181 5.181 13 N -0.216 5.216 14 H 0.301 0.699 15 C 0.022 3.978 16 C -0.170 4.170 17 C -0.072 4.072 18 C -0.178 4.178 19 C -0.069 4.069 20 C -0.217 4.217 21 H 0.084 0.916 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.181 0.819 25 H 0.193 0.807 26 H 0.177 0.823 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.066 -16.790 -0.031 17.537 hybrid contribution -0.204 0.792 0.003 0.818 sum 4.862 -15.998 -0.028 16.720 Atomic orbital electron populations 1.70102 1.08053 1.29257 1.49074 1.26097 0.96056 1.03693 0.93180 0.85057 0.77962 0.75602 0.79716 1.18557 1.19770 1.18567 1.21299 0.94574 0.89661 1.54344 0.90827 1.20136 0.88044 0.82158 0.95008 1.86254 1.36320 1.10484 1.87556 1.22348 0.90215 0.86954 0.95737 1.76765 1.17351 0.94623 1.29363 1.45304 1.07089 1.00663 1.68555 0.69876 1.19249 0.84853 0.95095 0.98643 1.20287 0.98031 0.90996 1.07661 1.21286 0.91134 1.01234 0.93547 1.21062 1.01869 0.90773 1.04111 1.20632 0.91943 0.98768 0.95592 1.19543 0.96497 0.88132 1.17511 0.91626 0.98526 0.98535 0.81929 0.80730 0.82291 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 15 2 C 0.01 0.54 5.46 84.65 0.46 1.00 15 3 Si 1.00 44.50 29.54 68.60 2.03 46.53 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 15 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 7 C -0.56 -34.38 9.43 25.60 0.24 -34.13 15 8 H 0.07 4.34 7.81 -2.91 -0.02 4.32 15 9 C 0.22 13.38 5.39 71.24 0.38 13.76 15 10 O -0.30 -16.72 10.20 -92.81 -0.95 -17.67 15 11 C 0.26 12.57 8.14 86.98 0.71 13.27 15 12 N -0.35 -15.89 11.96 -166.92 -2.00 -17.89 15 13 N -0.49 -16.53 7.36 -51.53 -0.38 -16.91 15 14 H 0.45 11.12 8.96 -213.47 -1.91 9.21 15 15 C 0.14 4.26 7.33 39.21 0.29 4.55 15 16 C -0.15 -2.96 10.03 22.14 0.22 -2.74 15 17 C -0.05 -0.85 9.96 22.06 0.22 -0.63 15 18 C -0.16 -3.23 9.97 22.04 0.22 -3.01 15 19 C -0.05 -1.48 10.06 22.25 0.22 -1.25 15 20 C -0.21 -7.89 6.37 -20.18 -0.13 -8.02 15 21 H 0.27 15.58 8.31 -92.71 -0.77 14.81 15 22 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 23 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 15 24 H 0.16 2.01 8.06 -2.91 -0.02 1.98 15 25 H 0.18 1.27 8.06 -2.91 -0.02 1.25 15 26 H 0.16 2.12 8.06 -2.91 -0.02 2.10 15 27 H 0.13 3.73 8.06 -2.91 -0.02 3.70 15 Total: -1.00 -75.92 249.41 1.11 -74.81 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -0.72 Total: 5.17 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 2.84 Total: -17.20 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -2.09 Total: -91.64 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.95 Total: -17.67 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -75.92 1.11 -74.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997099.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.411 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds