Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 11 11 N 1.46901 * 109.47303 * 59.99947 * 9 7 2 12 12 C 1.50702 * 109.47549 * 180.02562 * 9 7 2 13 13 S 1.72043 * 127.24091 * 284.68795 * 12 9 7 14 14 N 1.69604 * 95.71575 * 179.90480 * 13 12 9 15 15 C 1.30101 * 107.16207 * 0.35723 * 14 13 12 16 16 C 1.35179 * 127.24331 * 104.99436 * 12 9 7 17 17 Cl 1.73595 * 122.63364 * 359.97438 * 16 12 9 18 18 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 19 19 H 1.00908 * 110.99952 * 296.04738 * 11 9 7 20 20 H 1.00904 * 111.00233 * 59.99723 * 11 9 7 21 21 H 1.08004 * 121.56881 * 179.75861 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 1 3.8752 -0.6760 -0.8923 11 7 4.0008 -0.5078 1.1980 12 6 4.0138 -2.6151 -0.0126 13 16 4.0329 -3.7196 1.3063 14 7 4.7246 -5.0039 0.4411 15 6 4.9251 -4.5843 -0.7740 16 6 4.5494 -3.2879 -1.0555 17 17 4.7479 -2.5760 -2.6263 18 1 -0.4850 0.8401 0.0040 19 1 3.7314 0.4647 1.1942 20 1 3.6769 -0.9694 2.0347 21 1 5.3647 -5.2217 -1.5270 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260028887.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = 33.844553 kcal Electronic energy + Delta-G solvation = -10634.621362 eV Core-core repulsion = 8470.138174 eV Total energy + Delta-G solvation = -2164.483188 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.998 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.55342 -35.87835 -35.39909 -32.09895 -30.12796 -26.49907 -24.68470 -21.74476 -19.61691 -17.47033 -17.07977 -16.00653 -15.05571 -14.35619 -13.98386 -13.42967 -13.12766 -12.61405 -12.23772 -11.46985 -11.41211 -11.13911 -10.98673 -10.46138 -10.28356 -10.13882 -9.77728 -8.96193 -8.88763 -8.16824 -7.78115 -6.38617 -4.45370 1.14553 1.66432 2.17502 2.69153 3.01461 3.03599 3.17965 3.19072 4.09422 4.80809 5.00433 5.48128 5.58462 5.95638 6.03676 6.68690 6.83630 7.18585 7.78135 8.02551 8.23787 8.64948 9.17188 10.73233 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.034545 B = 0.012321 C = 0.010625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.345128 B = 2271.965008 C = 2634.671076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.081 3.919 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.256 1.256 6 H -0.286 1.286 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.238 3.762 10 H 0.072 0.928 11 N -0.848 5.848 12 C -0.077 4.077 13 S 0.294 5.706 14 N -0.482 5.482 15 C 0.104 3.896 16 C -0.154 4.154 17 Cl -0.043 7.043 18 H 0.270 0.730 19 H 0.327 0.673 20 H 0.333 0.667 21 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -3.594 -0.698 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.124 4.124 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.181 1.181 6 H -0.212 1.212 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.127 3.873 10 H 0.090 0.910 11 N -0.383 5.383 12 C -0.208 4.208 13 S 0.445 5.555 14 N -0.303 5.303 15 C -0.095 4.095 16 C -0.197 4.197 17 Cl -0.015 7.015 18 H 0.080 0.920 19 H 0.144 0.856 20 H 0.145 0.855 21 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.680 -4.634 0.827 9.874 hybrid contribution -0.538 1.829 -1.831 2.643 sum 8.142 -2.804 -1.003 8.670 Atomic orbital electron populations 1.69867 1.06158 1.27559 1.47906 1.24946 0.94870 0.98914 0.93703 0.87088 0.80660 0.83839 0.78939 1.19734 1.18058 1.21226 1.21465 0.88404 0.95496 1.53907 0.90196 1.18094 0.94080 0.83157 0.91944 0.90995 1.59725 1.66912 1.06239 1.05407 1.25676 0.95393 1.03172 0.96587 1.83952 1.56160 0.98905 1.16489 1.76783 1.22506 1.22469 1.08496 1.22406 0.98746 0.93410 0.94887 1.20914 1.13463 0.95137 0.90206 1.98320 1.96541 1.83316 1.23307 0.91993 0.85643 0.85516 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.19 13.96 55.43 0.77 -24.42 14 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 14 3 Si 0.87 19.74 24.62 -169.99 -4.19 15.55 14 4 H -0.27 -5.86 7.01 56.52 0.40 -5.46 14 5 H -0.26 -5.68 6.53 56.52 0.37 -5.31 14 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 14 7 C -0.55 -14.51 9.29 -34.44 -0.32 -14.83 14 8 H 0.08 2.32 7.98 -52.49 -0.42 1.90 14 9 C 0.24 5.39 2.62 -70.02 -0.18 5.20 14 10 H 0.07 1.70 6.40 -51.93 -0.33 1.36 14 11 N -0.85 -17.71 9.12 -6.65 -0.06 -17.78 14 12 C -0.08 -1.57 5.41 -35.40 -0.19 -1.76 14 13 S 0.29 5.35 23.21 -107.50 -2.49 2.85 14 14 N -0.48 -8.49 12.09 28.90 0.35 -8.14 14 15 C 0.10 1.70 11.16 -18.42 -0.21 1.50 14 16 C -0.15 -2.85 6.30 -40.80 -0.26 -3.11 14 17 Cl -0.04 -0.74 28.24 -51.86 -1.46 -2.20 14 18 H 0.27 7.23 8.31 -40.82 -0.34 6.89 14 19 H 0.33 6.88 4.32 -39.29 -0.17 6.71 14 20 H 0.33 6.55 8.53 -39.29 -0.34 6.22 14 21 H 0.18 2.30 8.06 -52.48 -0.42 1.88 14 LS Contribution 215.73 15.07 3.25 3.25 Total: -1.00 -27.86 215.73 -5.94 -33.79 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -0.85 Total: 8.01 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.25 Total: -10.92 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 1.06 Total: -50.34 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.19 Total: 15.55 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -2.49 Total: 2.85 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.46 Total: -2.20 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -27.86 -5.94 -33.79 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028887.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.637 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds