Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 11 11 N 1.46901 * 109.47303 * 59.99947 * 9 7 2 12 12 C 1.50702 * 109.47549 * 180.02562 * 9 7 2 13 13 S 1.72043 * 127.24091 * 284.68795 * 12 9 7 14 14 N 1.69604 * 95.71575 * 179.90480 * 13 12 9 15 15 C 1.30101 * 107.16207 * 0.35723 * 14 13 12 16 16 C 1.35179 * 127.24331 * 104.99436 * 12 9 7 17 17 Cl 1.73595 * 122.63364 * 359.97438 * 16 12 9 18 18 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 19 19 H 1.00908 * 110.99952 * 296.04738 * 11 9 7 20 20 H 1.00904 * 111.00233 * 59.99723 * 11 9 7 21 21 H 1.08004 * 121.56881 * 179.75861 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 1 3.8752 -0.6760 -0.8923 11 7 4.0008 -0.5078 1.1980 12 6 4.0138 -2.6151 -0.0126 13 16 4.0329 -3.7196 1.3063 14 7 4.7246 -5.0039 0.4411 15 6 4.9251 -4.5843 -0.7740 16 6 4.5494 -3.2879 -1.0555 17 17 4.7479 -2.5760 -2.6263 18 1 -0.4850 0.8401 0.0040 19 1 3.7314 0.4647 1.1942 20 1 3.6769 -0.9694 2.0347 21 1 5.3647 -5.2217 -1.5270 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260028887.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = 13.330456 kcal Electronic energy + Delta-G solvation = -10635.510920 eV Core-core repulsion = 8470.138174 eV Total energy + Delta-G solvation = -2165.372746 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.998 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.99170 -37.29730 -37.15060 -34.08606 -31.65723 -28.33891 -26.28695 -23.42843 -21.11693 -19.25731 -18.75045 -17.68702 -16.63551 -16.10330 -15.49213 -15.03140 -14.83215 -14.23698 -13.92354 -13.19836 -12.88613 -12.83813 -12.80196 -12.01431 -11.83319 -11.74306 -11.52745 -10.94828 -10.43487 -9.63711 -9.48994 -8.44185 -6.55694 -0.33198 0.20634 0.77837 1.23659 1.30115 1.33398 1.41037 1.56302 2.18231 2.88139 3.44321 3.98720 4.05703 4.36374 4.66046 4.98092 5.22922 5.40601 5.90328 6.20080 6.43394 6.56730 7.10908 8.71321 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.034545 B = 0.012321 C = 0.010625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.345128 B = 2271.965008 C = 2634.671076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.029 3.971 3 Si 0.927 3.073 4 H -0.249 1.249 5 H -0.244 1.244 6 H -0.289 1.289 7 C -0.553 4.553 8 H 0.038 0.962 9 C 0.248 3.752 10 H 0.064 0.936 11 N -0.838 5.838 12 C -0.116 4.116 13 S 0.303 5.697 14 N -0.483 5.483 15 C 0.113 3.887 16 C -0.151 4.151 17 Cl -0.033 7.033 18 H 0.272 0.728 19 H 0.327 0.673 20 H 0.340 0.660 21 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -3.557 -0.823 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.751 3.249 4 H -0.174 1.174 5 H -0.168 1.168 6 H -0.216 1.216 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.136 3.864 10 H 0.082 0.918 11 N -0.373 5.373 12 C -0.247 4.247 13 S 0.455 5.545 14 N -0.303 5.303 15 C -0.085 4.085 16 C -0.195 4.195 17 Cl -0.005 7.005 18 H 0.081 0.919 19 H 0.144 0.856 20 H 0.153 0.847 21 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 10.441 -4.607 0.727 11.435 hybrid contribution -1.082 1.683 -1.833 2.713 sum 9.359 -2.924 -1.105 9.867 Atomic orbital electron populations 1.70009 1.08064 1.28642 1.49848 1.25763 0.95520 1.02671 0.93239 0.86119 0.79540 0.79032 0.80221 1.17350 1.16812 1.21582 1.21620 0.90612 0.93882 1.53254 0.94336 1.17773 0.91487 0.84882 0.92217 0.91790 1.59664 1.66302 1.06160 1.05135 1.25559 0.97720 1.02901 0.98559 1.83853 1.56135 0.98588 1.15962 1.76838 1.22423 1.21987 1.09052 1.22874 0.97615 0.92889 0.95157 1.21198 1.12368 0.95743 0.90195 1.98324 1.96381 1.83314 1.22470 0.91867 0.85630 0.84748 0.76124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 13.96 21.45 0.30 -53.96 14 2 C 0.03 1.57 5.47 84.66 0.46 2.04 14 3 Si 0.93 40.02 24.62 68.60 1.69 41.71 14 4 H -0.25 -9.80 7.01 99.48 0.70 -9.11 14 5 H -0.24 -10.02 6.53 99.48 0.65 -9.37 14 6 H -0.29 -12.60 7.11 99.48 0.71 -11.90 14 7 C -0.55 -29.41 9.29 25.60 0.24 -29.17 14 8 H 0.04 2.31 7.98 -2.91 -0.02 2.29 14 9 C 0.25 11.00 2.62 43.42 0.11 11.11 14 10 H 0.06 2.93 6.40 -2.39 -0.02 2.92 14 11 N -0.84 -33.59 9.12 -174.96 -1.60 -35.18 14 12 C -0.12 -4.62 5.41 24.98 0.14 -4.48 14 13 S 0.30 10.66 23.21 -56.49 -1.31 9.34 14 14 N -0.48 -15.87 12.09 -62.48 -0.76 -16.62 14 15 C 0.11 3.38 11.16 84.86 0.95 4.33 14 16 C -0.15 -5.31 6.30 21.48 0.14 -5.17 14 17 Cl -0.03 -1.08 28.24 -2.72 -0.08 -1.15 14 18 H 0.27 14.84 8.31 -92.70 -0.77 14.07 14 19 H 0.33 12.99 4.32 -89.69 -0.39 12.60 14 20 H 0.34 12.92 8.53 -89.69 -0.77 12.16 14 21 H 0.22 4.69 8.06 -2.91 -0.02 4.66 14 Total: -1.00 -59.23 215.73 0.35 -58.88 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.07 Total: 18.32 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 2.03 Total: -21.34 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -2.05 Total: -105.76 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.69 Total: 41.71 kcal Atomic # 16 Polarization: 10.66 SS G_CDS: -1.31 Total: 9.34 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.15 kcal Total: -59.23 0.35 -58.88 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028887.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.208 kcal (2) G-P(sol) polarization free energy of solvation -59.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds