Wall clock time and date at job start Mon Mar 30 2020 02:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48499 * 109.46820 * 269.99722 * 3 2 1 5 5 H 1.48498 * 109.47263 * 29.99674 * 3 2 1 6 6 H 1.48504 * 109.46924 * 150.00357 * 3 2 1 7 7 C 1.37871 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00169 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47502 * 59.99698 * 9 7 2 11 11 N 1.46901 * 109.46841 * 300.00178 * 9 7 2 12 12 C 1.50693 * 109.47543 * 180.02562 * 9 7 2 13 13 S 1.72047 * 127.24545 * 74.97027 * 12 9 7 14 14 N 1.69604 * 95.71936 * 180.02562 * 13 12 9 15 15 C 1.30104 * 107.16078 * 359.97438 * 14 13 12 16 16 C 1.35192 * 127.24675 * 254.99909 * 12 9 7 17 17 Cl 1.73593 * 122.62792 * 359.97438 * 16 12 9 18 18 H 0.96998 * 119.99530 * 359.97438 * 1 2 3 19 19 H 1.00901 * 111.00058 * 176.04915 * 11 9 7 20 20 H 1.00903 * 111.00012 * 299.99447 * 11 9 7 21 21 H 1.07998 * 121.56239 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5572 -0.8896 11 7 0.4060 -2.5767 1.1997 12 6 2.2302 -3.6446 0.0018 13 16 3.1758 -4.2047 1.3255 14 7 3.9416 -5.4529 0.4700 15 6 3.4841 -5.4207 -0.7476 16 6 2.5510 -4.4480 -1.0371 17 17 1.8429 -4.2693 -2.6119 18 1 -0.4849 0.8401 0.0004 19 1 -0.1579 -3.4133 1.1912 20 1 0.9637 -2.5251 2.0390 21 1 3.8205 -6.1223 -1.4966 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260028889.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:02 Heat of formation + Delta-G solvation = 30.655791 kcal Electronic energy + Delta-G solvation = -10581.436793 eV Core-core repulsion = 8416.815330 eV Total energy + Delta-G solvation = -2164.621463 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.998 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.52523 -35.83890 -34.94656 -31.79021 -29.72530 -26.31673 -24.54124 -21.66631 -19.52895 -17.49552 -16.47147 -15.62033 -14.63652 -14.29233 -14.04606 -13.28418 -12.99087 -12.58945 -11.98282 -11.41156 -11.04949 -10.86831 -10.77761 -10.41104 -10.15564 -10.12823 -9.52954 -8.70427 -8.54044 -8.15969 -7.43885 -6.01999 -4.18744 1.13035 1.67987 2.16237 2.69351 3.05203 3.28463 3.35502 3.38606 4.38310 5.01101 5.24185 5.52170 5.89995 6.06999 6.21756 6.74489 7.17958 7.74550 7.93709 8.37263 8.75192 8.92508 9.50578 11.02401 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.032871 B = 0.011398 C = 0.010150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.621316 B = 2455.964063 C = 2757.941666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.088 3.912 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.285 3.715 10 H 0.073 0.927 11 N -0.804 5.804 12 C -0.127 4.127 13 S 0.268 5.732 14 N -0.483 5.483 15 C 0.103 3.897 16 C -0.157 4.157 17 Cl -0.041 7.041 18 H 0.259 0.741 19 H 0.303 0.697 20 H 0.321 0.679 21 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 -7.587 -0.837 8.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.120 4.120 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.075 0.925 9 C 0.172 3.828 10 H 0.090 0.910 11 N -0.330 5.330 12 C -0.260 4.260 13 S 0.418 5.582 14 N -0.303 5.303 15 C -0.096 4.096 16 C -0.200 4.200 17 Cl -0.013 7.013 18 H 0.069 0.931 19 H 0.114 0.886 20 H 0.133 0.867 21 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.711 -7.129 0.724 8.069 hybrid contribution 0.310 0.140 -1.807 1.838 sum 4.021 -6.989 -1.083 8.135 Atomic orbital electron populations 1.70090 1.05706 1.26200 1.45480 1.24896 0.94713 0.98645 0.93737 0.86655 0.80002 0.83452 0.78205 1.20562 1.21045 1.19799 1.20722 0.92260 0.88724 1.55820 0.92531 1.18069 0.86199 0.86213 0.92285 0.90999 1.59192 1.27583 1.42268 1.03929 1.27982 1.01328 1.00629 0.96110 1.83969 1.32680 1.24177 1.17355 1.76793 1.25772 1.19044 1.08654 1.22501 0.94382 0.97960 0.94745 1.21015 1.05964 1.02601 0.90431 1.98325 1.82767 1.97419 1.22752 0.93077 0.88599 0.86693 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.39 12.77 55.43 0.71 -22.68 14 2 C 0.09 2.36 5.39 -17.82 -0.10 2.26 14 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 14 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 14 7 C -0.54 -14.02 8.71 -34.44 -0.30 -14.32 14 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 14 9 C 0.28 6.66 2.99 -70.02 -0.21 6.45 14 10 H 0.07 1.85 7.36 -51.93 -0.38 1.47 14 11 N -0.80 -17.79 8.51 -6.65 -0.06 -17.84 14 12 C -0.13 -2.57 5.40 -35.40 -0.19 -2.76 14 13 S 0.27 4.83 23.21 -107.50 -2.50 2.33 14 14 N -0.48 -8.51 12.09 28.90 0.35 -8.16 14 15 C 0.10 1.69 11.16 -18.42 -0.21 1.49 14 16 C -0.16 -2.90 6.30 -40.80 -0.26 -3.16 14 17 Cl -0.04 -0.71 28.24 -51.86 -1.46 -2.17 14 18 H 0.26 6.90 8.31 -40.82 -0.34 6.56 14 19 H 0.30 5.97 9.06 -39.29 -0.36 5.61 14 20 H 0.32 6.73 8.53 -39.29 -0.34 6.40 14 21 H 0.18 2.31 8.06 -52.49 -0.42 1.89 14 LS Contribution 224.67 15.07 3.39 3.39 Total: -1.00 -27.77 224.67 -6.89 -34.66 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -1.04 Total: 4.87 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.26 Total: -10.04 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 1.00 Total: -48.68 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -2.50 Total: 2.33 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.46 Total: -2.17 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -27.77 -6.89 -34.66 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028889.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.320 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds