Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.36143 * 126.35508 * 264.68557 * 10 9 7 12 12 N 1.30062 * 110.09204 * 179.81459 * 11 10 9 13 13 C 1.35868 * 109.64811 * 0.45875 * 12 11 10 14 14 C 1.39759 * 133.51615 * 179.67577 * 13 12 11 15 15 C 1.36541 * 119.95937 * 180.02562 * 14 13 12 16 16 C 1.39226 * 120.61736 * 0.03929 * 15 14 13 17 17 O 1.35958 * 119.83386 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.33047 * 359.97438 * 16 15 14 19 19 C 1.38055 * 126.35133 * 85.00184 * 10 9 7 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.07998 * 124.95086 * 0.02562 * 11 10 9 24 24 H 1.08001 * 120.01759 * 0.02562 * 14 13 12 25 25 H 1.08004 * 119.68897 * 180.02562 * 15 14 13 26 26 H 0.96695 * 113.99380 * 269.97425 * 17 16 15 27 27 H 1.08004 * 120.17630 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6501 -4.2921 -1.0912 12 7 3.4901 -5.2167 -0.7289 13 6 3.6321 -5.2008 0.6223 14 6 4.3856 -5.9626 1.5197 15 6 4.3177 -5.7034 2.8585 16 6 3.5020 -4.6844 3.3431 17 8 3.4470 -4.4397 4.6793 18 6 2.7482 -3.9193 2.4718 19 6 2.8083 -4.1717 1.1082 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.3535 -4.0903 -2.1098 24 1 5.0211 -6.7557 1.1543 25 1 4.9022 -6.2944 3.5481 26 1 2.7621 -4.9407 5.1429 27 1 2.1160 -3.1297 2.8505 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260036415.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = 21.747947 kcal Electronic energy + Delta-G solvation = -13928.688558 eV Core-core repulsion = 11459.193895 eV Total energy + Delta-G solvation = -2469.494663 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.44113 -38.31770 -35.27872 -33.99878 -32.33191 -29.95006 -27.96101 -27.25793 -23.47217 -22.70537 -21.53365 -19.94467 -18.02548 -16.88810 -16.39884 -16.14758 -15.19587 -14.72847 -14.34412 -13.86793 -13.63086 -13.29331 -12.57716 -12.36592 -11.83795 -11.70538 -11.28507 -10.92494 -10.85660 -10.51837 -10.26496 -10.18002 -9.41787 -9.37906 -8.74960 -7.75611 -7.46528 -6.37982 -4.47455 1.38547 1.95651 3.17190 3.21354 3.23685 3.39030 3.57758 4.19158 4.23428 4.59892 4.81560 4.96596 5.21127 5.47236 5.83390 5.87751 5.93367 6.01993 6.36184 6.60860 6.80168 6.82963 6.95048 7.13852 7.34764 7.54326 7.73552 7.91054 7.96293 8.47932 8.59937 9.21294 10.69422 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.030406 B = 0.008942 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.660656 B = 3130.600817 C = 3656.976822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.237 3.763 10 N -0.458 5.458 11 C 0.262 3.738 12 N -0.520 5.520 13 C 0.030 3.970 14 C -0.058 4.058 15 C -0.158 4.158 16 C 0.096 3.904 17 O -0.497 6.497 18 C -0.116 4.116 19 C 0.067 3.933 20 H 0.270 0.730 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.207 0.793 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.382 0.618 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -8.012 3.759 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.118 3.882 10 N -0.143 5.143 11 C -0.024 4.024 12 N -0.240 5.240 13 C -0.090 4.090 14 C -0.078 4.078 15 C -0.179 4.179 16 C 0.050 3.950 17 O -0.306 6.306 18 C -0.137 4.137 19 C -0.046 4.046 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.224 0.776 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.237 0.763 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.534 -7.903 3.079 9.189 hybrid contribution -0.510 1.392 0.548 1.580 sum 3.024 -6.512 3.627 8.044 Atomic orbital electron populations 1.69902 1.06096 1.28013 1.48641 1.24932 0.94969 0.99593 0.94057 0.86403 0.79486 0.81676 0.79134 1.19827 1.20842 1.19820 1.21277 0.93744 0.89717 1.53765 0.91717 1.19773 0.86836 0.81621 0.99939 1.46206 1.35773 1.27838 1.04469 1.25217 0.93455 0.89734 0.94030 1.70415 1.19909 1.23114 1.10601 1.19151 1.00800 0.98249 0.90830 1.19700 0.98342 0.98760 0.91002 1.20687 1.02527 0.99305 0.95338 1.17896 0.98225 0.96082 0.82796 1.84857 1.59291 1.69348 1.17108 1.20219 1.01793 1.01781 0.89888 1.18658 0.99046 0.97216 0.89679 0.92046 0.93515 0.92826 0.77648 0.85691 0.85598 0.76317 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 13.29 55.43 0.74 -23.49 15 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 15 3 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 7 C -0.55 -14.44 9.39 -34.44 -0.32 -14.76 15 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 9 C 0.24 5.64 5.91 -5.19 -0.03 5.61 15 10 N -0.46 -9.94 2.79 -117.07 -0.33 -10.27 15 11 C 0.26 5.09 12.50 -89.72 -1.12 3.97 15 12 N -0.52 -10.56 11.27 -12.01 -0.14 -10.70 15 13 C 0.03 0.61 7.23 -84.66 -0.61 -0.01 15 14 C -0.06 -0.98 10.04 -39.63 -0.40 -1.38 15 15 C -0.16 -2.43 9.90 -39.83 -0.39 -2.83 15 16 C 0.10 1.62 6.70 -39.19 -0.26 1.36 15 17 O -0.50 -7.25 13.50 -19.61 -0.26 -7.51 15 18 C -0.12 -2.26 9.98 -39.35 -0.39 -2.66 15 19 C 0.07 1.42 6.87 -84.00 -0.58 0.85 15 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 21 H 0.05 1.17 8.14 -51.93 -0.42 0.74 15 22 H 0.05 1.27 8.13 -51.93 -0.42 0.85 15 23 H 0.21 3.19 8.06 -52.49 -0.42 2.77 15 24 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.13 1.56 8.06 -52.48 -0.42 1.14 15 26 H 0.38 3.52 9.06 45.56 0.41 3.93 15 27 H 0.13 2.58 8.06 -52.48 -0.42 2.16 15 LS Contribution 249.38 15.07 3.76 3.76 Total: -1.00 -30.15 249.38 -7.13 -37.28 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -1.67 Total: 3.42 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -4.21 Total: -8.13 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.27 Total: -44.45 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.26 Total: -7.51 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.15 -7.13 -37.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036415.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.028 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds