Wall clock time and date at job start Mon Mar 30 2020 02:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 11 11 N 1.46899 * 109.46967 * 60.00185 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.39824 * 118.98295 * 279.72825 * 12 9 7 14 14 C 1.35786 * 121.70991 * 179.67576 * 13 12 9 15 15 C 1.40563 * 119.35469 * 0.62157 * 14 13 12 16 16 C 1.37851 * 137.74368 * 179.66437 * 15 14 13 17 17 O 1.33671 * 106.17752 * 180.02562 * 16 15 14 18 18 N 1.21109 * 113.64910 * 359.97438 * 17 16 15 19 19 C 1.31252 * 112.02975 * 0.02562 * 18 17 16 20 20 C 1.35650 * 118.98230 * 100.00506 * 12 9 7 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.00902 * 110.99647 * 60.00247 * 11 9 7 23 23 H 1.00897 * 110.99501 * 183.95535 * 11 9 7 24 24 H 1.08003 * 119.14276 * 359.97438 * 13 12 9 25 25 H 1.08004 * 120.32003 * 180.31174 * 14 13 12 26 26 H 1.07999 * 126.91602 * 0.02562 * 16 15 14 27 27 H 1.07994 * 120.25243 * 0.02562 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 6 2.8279 -4.0251 -1.2061 14 6 3.7225 -5.0447 -1.2687 15 6 4.0501 -5.7470 -0.0959 16 6 4.8630 -6.7983 0.2704 17 8 4.6938 -6.9589 1.5866 18 7 3.9107 -6.1746 2.0750 19 6 3.4156 -5.3516 1.1804 20 6 2.5010 -4.2781 1.1680 21 1 -0.4849 -0.8401 0.0004 22 1 0.9639 -2.5252 -2.0389 23 1 -0.1578 -3.4134 -1.1911 24 1 2.5747 -3.4912 -2.1101 25 1 4.1743 -5.3166 -2.2113 26 1 5.5071 -7.3760 -0.3759 27 1 2.0191 -3.9633 2.0818 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062191.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:43 Heat of formation + Delta-G solvation = 79.385228 kcal Electronic energy + Delta-G solvation = -13995.425501 eV Core-core repulsion = 11528.430178 eV Total energy + Delta-G solvation = -2466.995323 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.44941 -38.50619 -34.94589 -32.50247 -31.95191 -30.45079 -29.79660 -25.91409 -24.13550 -23.39321 -21.17243 -20.53659 -17.71557 -17.39675 -17.37785 -16.55541 -15.64239 -14.51126 -14.04887 -13.84691 -13.67950 -13.23972 -12.65960 -12.11738 -12.03733 -11.66730 -11.24459 -10.73138 -10.63571 -10.39560 -10.24495 -10.08211 -9.22006 -8.48878 -8.35799 -7.65176 -7.56545 -6.24014 -4.08294 0.62579 1.85227 2.48580 3.30951 3.45630 3.48200 3.64207 3.99001 4.10416 4.57057 4.65879 5.01493 5.25859 5.38918 5.43416 5.64833 5.84110 5.92847 6.05567 6.34364 6.37025 6.67505 6.77458 7.14254 7.23312 7.88109 8.19759 8.45500 8.57045 8.66549 8.98629 9.75511 11.16064 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.045440 B = 0.007536 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.054025 B = 3714.672021 C = 3838.215039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.040 3.960 3 Si 1.067 2.933 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.290 1.290 7 C -0.611 4.611 8 H 0.047 0.953 9 C 0.235 3.765 10 H 0.042 0.958 11 N -0.828 5.828 12 C -0.038 4.038 13 C -0.093 4.093 14 C -0.086 4.086 15 C -0.179 4.179 16 C -0.056 4.056 17 O 0.128 5.872 18 N -0.383 5.383 19 C 0.050 3.950 20 C -0.109 4.109 21 H 0.290 0.710 22 H 0.327 0.673 23 H 0.304 0.696 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.222 0.778 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -11.382 -3.126 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.170 4.170 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.650 4.650 8 H 0.066 0.934 9 C 0.126 3.874 10 H 0.060 0.940 11 N -0.356 5.356 12 C -0.044 4.044 13 C -0.111 4.111 14 C -0.105 4.105 15 C -0.183 4.183 16 C -0.144 4.144 17 O 0.061 5.939 18 N -0.088 5.088 19 C -0.096 4.096 20 C -0.129 4.129 21 H 0.103 0.897 22 H 0.140 0.860 23 H 0.114 0.886 24 H 0.146 0.854 25 H 0.145 0.855 26 H 0.238 0.762 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.774 -9.173 -1.485 11.499 hybrid contribution 0.907 -2.312 -1.059 2.700 sum 7.681 -11.485 -2.544 14.049 Atomic orbital electron populations 1.70530 1.06833 1.32854 1.42002 1.25643 0.96572 1.01844 0.92991 0.83591 0.74674 0.75437 0.76671 1.21588 1.21043 1.21676 1.21663 0.93459 0.90206 1.59631 0.93420 1.18486 0.88034 0.90342 0.90531 0.94002 1.59455 1.28454 1.42417 1.05242 1.21169 0.96491 0.95320 0.91446 1.20821 0.95926 0.95739 0.98652 1.19990 0.98942 0.96234 0.95332 1.20355 1.01874 0.99707 0.96345 1.25795 1.02928 1.00287 0.85371 1.84587 1.44869 1.43474 1.21014 1.74098 1.08511 1.05595 1.20557 1.22079 1.00031 0.98334 0.89173 1.19787 0.99223 0.94587 0.99341 0.89705 0.85982 0.88564 0.85414 0.85520 0.76195 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.51 55.43 0.75 -25.56 15 2 C 0.04 1.11 5.39 -17.82 -0.10 1.01 15 3 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 15 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.61 -16.60 8.70 -34.44 -0.30 -16.90 15 8 H 0.05 1.33 7.74 -52.48 -0.41 0.92 15 9 C 0.24 5.61 2.42 -70.02 -0.17 5.44 15 10 H 0.04 1.09 7.78 -51.93 -0.40 0.69 15 11 N -0.83 -18.03 7.61 -6.65 -0.05 -18.08 15 12 C -0.04 -0.79 4.86 -104.95 -0.51 -1.29 15 13 C -0.09 -1.66 9.14 -39.87 -0.36 -2.02 15 14 C -0.09 -1.31 10.08 -39.58 -0.40 -1.71 15 15 C -0.18 -2.86 6.53 -105.20 -0.69 -3.54 15 16 C -0.06 -0.68 12.41 30.59 0.38 -0.30 15 17 O 0.13 1.89 11.05 18.08 0.20 2.09 15 18 N -0.38 -6.99 12.10 33.20 0.40 -6.59 15 19 C 0.05 0.96 7.61 -83.09 -0.63 0.33 15 20 C -0.11 -2.24 9.64 -39.45 -0.38 -2.62 15 21 H 0.29 8.56 6.39 -40.82 -0.26 8.30 15 22 H 0.33 6.71 7.22 -39.29 -0.28 6.42 15 23 H 0.30 5.82 9.06 -39.29 -0.36 5.46 15 24 H 0.13 2.14 6.52 -52.48 -0.34 1.79 15 25 H 0.13 1.47 8.06 -52.48 -0.42 1.04 15 26 H 0.22 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.13 2.63 7.97 -52.49 -0.42 2.21 15 LS Contribution 241.06 15.07 3.63 3.63 Total: -1.00 -31.53 241.06 -5.42 -36.95 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.11 Total: 9.27 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.16 Total: -21.61 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 1.10 Total: -50.23 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.20 Total: 2.09 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.53 -5.42 -36.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062191.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.339 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds