Wall clock time and date at job start Mon Mar 30 2020 02:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 11 11 N 1.46899 * 109.46967 * 60.00185 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.39824 * 118.98295 * 279.72825 * 12 9 7 14 14 C 1.35786 * 121.70991 * 179.67576 * 13 12 9 15 15 C 1.40563 * 119.35469 * 0.62157 * 14 13 12 16 16 C 1.37851 * 137.74368 * 179.66437 * 15 14 13 17 17 O 1.33671 * 106.17752 * 180.02562 * 16 15 14 18 18 N 1.21109 * 113.64910 * 359.97438 * 17 16 15 19 19 C 1.31252 * 112.02975 * 0.02562 * 18 17 16 20 20 C 1.35650 * 118.98230 * 100.00506 * 12 9 7 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.00902 * 110.99647 * 60.00247 * 11 9 7 23 23 H 1.00897 * 110.99501 * 183.95535 * 11 9 7 24 24 H 1.08003 * 119.14276 * 359.97438 * 13 12 9 25 25 H 1.08004 * 120.32003 * 180.31174 * 14 13 12 26 26 H 1.07999 * 126.91602 * 0.02562 * 16 15 14 27 27 H 1.07994 * 120.25243 * 0.02562 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 6 2.8279 -4.0251 -1.2061 14 6 3.7225 -5.0447 -1.2687 15 6 4.0501 -5.7470 -0.0959 16 6 4.8630 -6.7983 0.2704 17 8 4.6938 -6.9589 1.5866 18 7 3.9107 -6.1746 2.0750 19 6 3.4156 -5.3516 1.1804 20 6 2.5010 -4.2781 1.1680 21 1 -0.4849 -0.8401 0.0004 22 1 0.9639 -2.5252 -2.0389 23 1 -0.1578 -3.4134 -1.1911 24 1 2.5747 -3.4912 -2.1101 25 1 4.1743 -5.3166 -2.2113 26 1 5.5071 -7.3760 -0.3759 27 1 2.0191 -3.9633 2.0818 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062191.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:42 Heat of formation + Delta-G solvation = 56.820606 kcal Electronic energy + Delta-G solvation = -13996.403977 eV Core-core repulsion = 11528.430178 eV Total energy + Delta-G solvation = -2467.973799 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.73783 -39.95415 -36.67326 -33.87080 -33.70089 -32.03825 -31.17182 -27.83311 -25.56794 -25.00436 -22.81660 -21.81993 -19.35249 -18.66794 -18.66050 -18.33782 -17.17416 -16.22181 -15.59295 -15.44673 -15.22485 -14.84271 -14.14742 -13.87344 -13.45334 -13.12759 -12.90512 -12.58166 -12.37590 -11.91218 -11.71544 -11.65595 -10.99088 -10.52030 -10.08973 -9.39488 -8.94866 -8.42421 -6.29570 -0.58170 0.48393 1.23893 1.55227 1.63026 1.80858 2.32657 2.54585 2.66931 2.81280 3.28204 3.38696 3.82082 4.03108 4.12399 4.17473 4.38277 4.54814 4.71595 4.89992 5.02231 5.11342 5.29587 5.65229 5.75360 5.89006 6.16542 6.61688 6.74368 7.00118 7.29687 7.61792 8.94126 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.045440 B = 0.007536 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.054025 B = 3714.672021 C = 3838.215039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 1.113 2.887 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.617 4.617 8 H 0.036 0.964 9 C 0.239 3.761 10 H 0.004 0.996 11 N -0.832 5.832 12 C -0.041 4.041 13 C -0.134 4.134 14 C -0.041 4.041 15 C -0.211 4.211 16 C 0.007 3.993 17 O 0.138 5.862 18 N -0.417 5.417 19 C 0.020 3.980 20 C -0.141 4.141 21 H 0.279 0.721 22 H 0.336 0.664 23 H 0.319 0.681 24 H 0.134 0.866 25 H 0.178 0.822 26 H 0.291 0.709 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.344 -13.253 -4.982 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.213 4.213 3 Si 0.936 3.064 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.656 4.656 8 H 0.055 0.945 9 C 0.129 3.871 10 H 0.022 0.978 11 N -0.361 5.361 12 C -0.047 4.047 13 C -0.153 4.153 14 C -0.060 4.060 15 C -0.215 4.215 16 C -0.081 4.081 17 O 0.071 5.929 18 N -0.122 5.122 19 C -0.125 4.125 20 C -0.161 4.161 21 H 0.090 0.910 22 H 0.150 0.850 23 H 0.131 0.869 24 H 0.152 0.848 25 H 0.196 0.804 26 H 0.306 0.694 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.545 -11.060 -3.329 14.983 hybrid contribution 0.175 -1.972 -0.480 2.037 sum 9.720 -13.032 -3.808 16.697 Atomic orbital electron populations 1.70644 1.07725 1.32208 1.44627 1.26989 0.96674 1.05412 0.92197 0.82989 0.74207 0.71950 0.77226 1.20712 1.20825 1.19912 1.21928 0.93094 0.91904 1.58634 0.94530 1.18124 0.88305 0.90877 0.89802 0.97799 1.59183 1.28558 1.43583 1.04800 1.20858 0.96337 0.94455 0.93070 1.20798 0.98631 0.98425 0.97406 1.20464 0.95569 0.93084 0.96892 1.20751 1.03601 1.01823 0.95353 1.27092 0.99558 0.97286 0.84167 1.84569 1.43577 1.42239 1.22486 1.74119 1.10063 1.06619 1.21362 1.22125 1.00557 0.98405 0.91421 1.19630 1.01206 0.96714 0.98563 0.90960 0.85001 0.86902 0.84783 0.80444 0.69364 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.51 21.45 0.29 -55.71 15 2 C -0.01 -0.50 5.39 84.65 0.46 -0.05 15 3 Si 1.11 50.85 29.90 68.60 2.05 52.90 15 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.62 -34.69 8.70 25.60 0.22 -34.47 15 8 H 0.04 2.09 7.74 -2.91 -0.02 2.06 15 9 C 0.24 11.99 2.42 43.42 0.11 12.10 15 10 H 0.00 0.24 7.78 -2.39 -0.02 0.22 15 11 N -0.83 -37.46 7.61 -174.95 -1.33 -38.79 15 12 C -0.04 -1.77 4.86 -20.08 -0.10 -1.87 15 13 C -0.13 -4.63 9.14 22.08 0.20 -4.43 15 14 C -0.04 -1.10 10.08 22.27 0.22 -0.87 15 15 C -0.21 -5.94 6.53 -20.24 -0.13 -6.07 15 16 C 0.01 0.12 12.41 67.73 0.84 0.96 15 17 O 0.14 3.57 11.05 74.82 0.83 4.40 15 18 N -0.42 -14.83 12.10 -49.14 -0.59 -15.42 15 19 C 0.02 0.76 7.61 42.48 0.32 1.09 15 20 C -0.14 -6.10 9.64 22.36 0.22 -5.89 15 21 H 0.28 17.20 6.39 -92.71 -0.59 16.61 15 22 H 0.34 13.97 7.22 -89.69 -0.65 13.33 15 23 H 0.32 12.65 9.06 -89.70 -0.81 11.83 15 24 H 0.13 4.34 6.52 -2.91 -0.02 4.32 15 25 H 0.18 2.88 8.06 -2.91 -0.02 2.86 15 26 H 0.29 0.97 8.06 -2.91 -0.02 0.95 15 27 H 0.10 4.74 7.97 -2.91 -0.02 4.72 15 Total: -1.00 -73.42 241.06 3.54 -69.88 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.06 Total: 22.24 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 2.36 Total: -39.49 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -1.64 Total: -109.93 kcal Atomic # 8 Polarization: 3.57 SS G_CDS: 0.83 Total: 4.40 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -73.42 3.54 -69.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062191.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.699 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds