Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35723 * 117.00112 * 2 1 4 4 C 1.38251 * 120.25300 * 359.97338 * 3 2 1 5 5 C 1.38589 * 120.25544 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.81771 * 0.02625 * 5 4 3 7 7 C 1.38595 * 120.22264 * 359.97438 * 6 5 4 8 8 O 1.35108 * 132.69144 * 180.02562 * 7 6 5 9 9 C 1.35145 * 109.89585 * 179.97438 * 8 7 6 10 10 C 1.39681 * 125.54665 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00036 * 179.97438 * 10 9 8 12 12 C 1.40205 * 119.99899 * 359.97438 * 10 9 8 13 13 N 1.30759 * 120.00168 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99757 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47333 * 59.99971 * 14 12 10 16 16 H 1.48500 * 109.46793 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46891 * 299.99723 * 14 12 10 18 18 C 1.39093 * 108.89934 * 0.02562 * 9 8 7 19 19 C 1.40772 * 120.25748 * 179.97438 * 3 2 1 20 20 H 1.08994 * 109.47444 * 60.00225 * 1 2 3 21 21 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47565 * 300.00119 * 1 2 3 23 23 H 1.08001 * 119.87520 * 0.02852 * 4 3 2 24 24 H 1.08002 * 119.59519 * 179.97438 * 5 4 3 25 25 H 1.08006 * 119.89211 * 180.02562 * 6 5 4 26 26 H 0.97005 * 119.99785 * 179.97438 * 13 12 10 27 27 H 1.08002 * 126.68210 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2973 2.3721 -0.0006 5 6 1.9265 3.6069 -0.0011 6 6 3.3057 3.6990 -0.0016 7 6 4.0816 2.5506 -0.0011 8 8 5.4173 2.3474 -0.0010 9 6 5.6808 1.0219 0.0002 10 6 6.9539 0.4471 0.0012 11 1 7.0611 -0.6276 0.0025 12 6 8.0925 1.2652 0.0004 13 7 7.9626 2.5663 -0.0017 14 14 9.7950 0.4964 0.0010 15 1 9.9580 -0.3463 -1.2107 16 1 10.8222 1.5688 0.0007 17 1 9.9580 -0.3442 1.2142 18 6 4.4780 0.3234 0.0003 19 6 3.4506 1.2893 0.0005 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2186 2.3180 -0.0005 24 1 1.3318 4.5085 -0.0019 25 1 3.7804 4.6691 -0.0016 26 1 8.7504 3.1324 -0.0018 27 1 4.3551 -0.7496 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260087958.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = -29.993599 kcal Electronic energy + Delta-G solvation = -14000.768438 eV Core-core repulsion = 11496.737342 eV Total energy + Delta-G solvation = -2504.031096 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72380 -38.53159 -35.61390 -33.80242 -31.33673 -29.17257 -28.52450 -26.92485 -25.16264 -21.43321 -21.10769 -19.86799 -17.96266 -16.99366 -15.69146 -15.20418 -15.15125 -15.11637 -14.27695 -14.18449 -13.77651 -12.63406 -12.16049 -12.02647 -11.60977 -11.54548 -11.38573 -11.21966 -10.91537 -10.58578 -10.39695 -10.25924 -9.96194 -9.62120 -8.58892 -7.55518 -7.08483 -6.81103 -4.57886 2.16754 2.48277 2.89168 2.93067 2.96554 3.71218 3.74549 4.00611 4.49184 4.78497 5.07192 5.43578 5.52070 5.64809 5.78625 5.85649 6.02771 6.37653 6.48605 6.77805 6.83297 6.93949 7.19536 7.32139 7.47652 7.55564 7.73245 7.91214 8.22453 8.37379 8.46923 8.98035 9.88959 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.050798 B = 0.007920 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.074897 B = 3534.338165 C = 4070.270124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.316 6.316 3 C 0.093 3.907 4 C -0.214 4.214 5 C -0.146 4.146 6 C -0.115 4.115 7 C 0.002 3.998 8 O -0.165 6.165 9 C 0.236 3.764 10 C -0.427 4.427 11 H 0.111 0.889 12 C 0.065 3.935 13 N -0.761 5.761 14 Si 0.930 3.070 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.403 4.403 19 C -0.061 4.061 20 H 0.046 0.954 21 H 0.088 0.912 22 H 0.046 0.954 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.291 0.709 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -0.519 0.002 5.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.230 6.230 3 C 0.049 3.951 4 C -0.234 4.234 5 C -0.164 4.164 6 C -0.134 4.134 7 C -0.046 4.046 8 O -0.065 6.065 9 C 0.185 3.815 10 C -0.455 4.455 11 H 0.129 0.871 12 C -0.159 4.159 13 N -0.385 5.385 14 Si 0.752 3.248 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.184 1.184 18 C -0.424 4.424 19 C -0.062 4.062 20 H 0.065 0.935 21 H 0.107 0.893 22 H 0.065 0.935 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.875 -0.251 0.001 4.881 hybrid contribution 0.305 -0.163 0.002 0.346 sum -4.570 -0.413 0.003 4.588 Atomic orbital electron populations 1.22853 0.80354 1.02551 1.00556 1.85992 1.19557 1.27872 1.89557 1.18357 0.90098 0.83488 1.03129 1.20622 0.98244 0.92257 1.12233 1.20071 0.92743 0.96132 1.07480 1.19551 0.92228 0.94947 1.06670 1.19469 0.83081 0.94139 1.07926 1.84665 1.19221 1.26193 1.76413 1.19557 0.94158 0.78365 0.89376 1.18953 0.87026 0.95359 1.44126 0.87098 1.26289 1.02838 0.94707 0.92052 1.69741 1.33654 1.04673 1.30404 0.85993 0.78766 0.79587 0.80413 1.18352 1.19880 1.18358 1.20872 0.89622 0.97661 1.34249 1.18078 0.90326 0.94581 1.03265 0.93508 0.89345 0.93516 0.87038 0.86885 0.87002 0.89839 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 15 2 O -0.32 -6.61 10.50 -18.87 -0.20 -6.81 15 3 C 0.09 2.15 6.74 -38.62 -0.26 1.89 15 4 C -0.21 -4.28 9.04 -39.45 -0.36 -4.64 15 5 C -0.15 -2.87 10.01 -39.45 -0.40 -3.27 15 6 C -0.12 -2.58 10.05 -39.45 -0.40 -2.97 15 7 C 0.00 0.04 7.36 -38.39 -0.28 -0.24 15 8 O -0.16 -4.71 8.90 1.07 0.01 -4.70 15 9 C 0.24 6.63 6.75 -38.73 -0.26 6.37 15 10 C -0.43 -11.14 9.30 -38.30 -0.36 -11.49 15 11 H 0.11 2.65 7.85 -52.49 -0.41 2.24 15 12 C 0.06 1.57 5.50 -17.27 -0.09 1.48 15 13 N -0.76 -19.52 11.96 55.56 0.66 -18.86 15 14 Si 0.93 17.61 29.56 -169.99 -5.03 12.58 15 15 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 18 C -0.40 -10.97 10.94 -38.21 -0.42 -11.39 15 19 C -0.06 -1.61 6.12 -106.83 -0.65 -2.26 15 20 H 0.05 0.62 7.66 -51.93 -0.40 0.22 15 21 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.05 0.62 7.67 -51.93 -0.40 0.22 15 23 H 0.11 1.83 6.29 -52.49 -0.33 1.50 15 24 H 0.11 1.81 8.06 -52.49 -0.42 1.39 15 25 H 0.11 2.26 8.06 -52.48 -0.42 1.83 15 26 H 0.29 6.64 8.29 -40.82 -0.34 6.30 15 27 H 0.12 3.20 8.06 -52.49 -0.42 2.78 15 LS Contribution 243.95 15.07 3.68 3.68 Total: -1.00 -29.82 243.95 -5.72 -35.54 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -2.36 Total: 3.64 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.48 Total: -25.07 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.66 Total: -18.86 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.19 Total: -11.51 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.82 -5.72 -35.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087958.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.543 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds