Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35723 * 117.00112 * 2 1 4 4 C 1.38251 * 120.25300 * 359.97338 * 3 2 1 5 5 C 1.38589 * 120.25544 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.81771 * 0.02625 * 5 4 3 7 7 C 1.38595 * 120.22264 * 359.97438 * 6 5 4 8 8 O 1.35108 * 132.69144 * 180.02562 * 7 6 5 9 9 C 1.35145 * 109.89585 * 179.97438 * 8 7 6 10 10 C 1.39681 * 125.54665 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00036 * 179.97438 * 10 9 8 12 12 C 1.40205 * 119.99899 * 359.97438 * 10 9 8 13 13 N 1.30759 * 120.00168 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99757 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47333 * 59.99971 * 14 12 10 16 16 H 1.48500 * 109.46793 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46891 * 299.99723 * 14 12 10 18 18 C 1.39093 * 108.89934 * 0.02562 * 9 8 7 19 19 C 1.40772 * 120.25748 * 179.97438 * 3 2 1 20 20 H 1.08994 * 109.47444 * 60.00225 * 1 2 3 21 21 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47565 * 300.00119 * 1 2 3 23 23 H 1.08001 * 119.87520 * 0.02852 * 4 3 2 24 24 H 1.08002 * 119.59519 * 179.97438 * 5 4 3 25 25 H 1.08006 * 119.89211 * 180.02562 * 6 5 4 26 26 H 0.97005 * 119.99785 * 179.97438 * 13 12 10 27 27 H 1.08002 * 126.68210 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2973 2.3721 -0.0006 5 6 1.9265 3.6069 -0.0011 6 6 3.3057 3.6990 -0.0016 7 6 4.0816 2.5506 -0.0011 8 8 5.4173 2.3474 -0.0010 9 6 5.6808 1.0219 0.0002 10 6 6.9539 0.4471 0.0012 11 1 7.0611 -0.6276 0.0025 12 6 8.0925 1.2652 0.0004 13 7 7.9626 2.5663 -0.0017 14 14 9.7950 0.4964 0.0010 15 1 9.9580 -0.3463 -1.2107 16 1 10.8222 1.5688 0.0007 17 1 9.9580 -0.3442 1.2142 18 6 4.4780 0.3234 0.0003 19 6 3.4506 1.2893 0.0005 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2186 2.3180 -0.0005 24 1 1.3318 4.5085 -0.0019 25 1 3.7804 4.6691 -0.0016 26 1 8.7504 3.1324 -0.0018 27 1 4.3551 -0.7496 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260087958.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = -48.807644 kcal Electronic energy + Delta-G solvation = -14001.584276 eV Core-core repulsion = 11496.737342 eV Total energy + Delta-G solvation = -2504.846934 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.63343 -40.15549 -37.31350 -35.67365 -33.22988 -31.02242 -30.23468 -28.30688 -26.95499 -23.21668 -22.89661 -21.75372 -19.84294 -18.69080 -17.43400 -16.96989 -16.74912 -16.72848 -16.10969 -15.85755 -15.35629 -14.27530 -13.88387 -13.66330 -13.16974 -13.12527 -13.05814 -12.90346 -12.69518 -12.17459 -11.99767 -11.80632 -11.69033 -11.34599 -10.49425 -9.39496 -8.90700 -8.62871 -6.55078 0.39985 0.71006 1.33474 1.36637 1.53598 1.92388 2.12869 2.54228 2.62255 2.97898 3.13637 4.13450 4.15489 4.31221 4.43444 4.45395 4.59056 4.72653 4.83979 4.95488 5.02046 5.12512 5.34852 5.57514 5.65446 5.74586 5.85561 6.07028 6.39286 6.49155 6.71774 7.00651 8.10487 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.050798 B = 0.007920 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.074897 B = 3534.338165 C = 4070.270124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.089 3.911 4 C -0.207 4.207 5 C -0.117 4.117 6 C -0.134 4.134 7 C -0.033 4.033 8 O -0.190 6.190 9 C 0.203 3.797 10 C -0.459 4.459 11 H 0.120 0.880 12 C 0.022 3.978 13 N -0.801 5.801 14 Si 1.013 2.987 15 H -0.251 1.251 16 H -0.261 1.261 17 H -0.251 1.251 18 C -0.436 4.436 19 C -0.100 4.100 20 H 0.064 0.936 21 H 0.116 0.884 22 H 0.064 0.936 23 H 0.159 0.841 24 H 0.165 0.835 25 H 0.129 0.871 26 H 0.301 0.699 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 0.092 0.002 6.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.045 3.955 4 C -0.226 4.226 5 C -0.135 4.135 6 C -0.153 4.153 7 C -0.080 4.080 8 O -0.092 6.092 9 C 0.153 3.847 10 C -0.486 4.486 11 H 0.138 0.862 12 C -0.198 4.198 13 N -0.425 5.425 14 Si 0.830 3.170 15 H -0.175 1.175 16 H -0.185 1.185 17 H -0.175 1.175 18 C -0.457 4.457 19 C -0.101 4.101 20 H 0.083 0.917 21 H 0.134 0.866 22 H 0.083 0.917 23 H 0.176 0.824 24 H 0.183 0.817 25 H 0.147 0.853 26 H 0.112 0.888 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.397 0.361 0.001 6.407 hybrid contribution 0.436 -0.288 0.002 0.523 sum -5.961 0.074 0.003 5.961 Atomic orbital electron populations 1.23297 0.76792 1.05154 1.02154 1.85960 1.23216 1.27261 1.89263 1.18596 0.89301 0.85438 1.02197 1.21163 1.00446 0.91013 1.09975 1.20745 0.91765 0.98121 1.02868 1.20013 0.93457 0.94502 1.07334 1.20173 0.82623 0.95816 1.09426 1.84581 1.20864 1.26475 1.77265 1.20047 0.95311 0.78628 0.90734 1.19400 0.87566 0.96265 1.45389 0.86190 1.27397 1.07009 0.94873 0.90495 1.69813 1.35535 1.06369 1.30813 0.84784 0.72544 0.78816 0.80821 1.17461 1.18532 1.17468 1.20952 0.90523 0.97693 1.36526 1.18410 0.92214 0.94296 1.05178 0.91735 0.86598 0.91744 0.82399 0.81733 0.85312 0.88839 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 15 2 O -0.34 -13.96 10.50 -90.45 -0.95 -14.91 15 3 C 0.09 4.04 6.74 22.89 0.15 4.20 15 4 C -0.21 -7.50 9.04 22.36 0.20 -7.30 15 5 C -0.12 -4.16 10.01 22.35 0.22 -3.93 15 6 C -0.13 -5.89 10.05 22.35 0.22 -5.67 15 7 C -0.03 -1.82 7.36 23.04 0.17 -1.65 15 8 O -0.19 -11.55 8.90 -19.08 -0.17 -11.72 15 9 C 0.20 12.18 6.75 22.82 0.15 12.34 15 10 C -0.46 -25.28 9.30 23.10 0.21 -25.06 15 11 H 0.12 6.07 7.85 -2.91 -0.02 6.04 15 12 C 0.02 1.08 5.50 85.33 0.47 1.55 15 13 N -0.80 -42.58 11.96 21.88 0.26 -42.32 15 14 Si 1.01 36.26 29.56 68.60 2.03 38.28 15 15 H -0.25 -8.57 7.11 99.48 0.71 -7.86 15 16 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 17 H -0.25 -8.57 7.11 99.48 0.71 -7.87 15 18 C -0.44 -25.38 10.94 23.16 0.25 -25.13 15 19 C -0.10 -5.43 6.12 -21.29 -0.13 -5.56 15 20 H 0.06 1.43 7.66 -2.39 -0.02 1.41 15 21 H 0.12 2.30 8.14 -2.38 -0.02 2.28 15 22 H 0.06 1.42 7.67 -2.39 -0.02 1.41 15 23 H 0.16 4.22 6.29 -2.91 -0.02 4.20 15 24 H 0.17 4.20 8.06 -2.91 -0.02 4.17 15 25 H 0.13 5.07 8.06 -2.91 -0.02 5.04 15 26 H 0.30 14.06 8.29 -92.70 -0.77 13.29 15 27 H 0.12 6.66 8.06 -2.91 -0.02 6.63 15 Total: -1.00 -69.91 243.95 5.40 -64.51 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 1.18 Total: 20.73 kcal Atomic # 6 Polarization: -57.63 SS G_CDS: 3.05 Total: -54.59 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.26 Total: -42.32 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -1.12 Total: -26.63 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.28 kcal Total: -69.91 5.40 -64.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087958.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.704 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds