Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99889 * 2 1 4 4 H 1.48496 * 109.47173 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47279 * 30.00452 * 3 2 1 6 6 H 1.48505 * 109.46812 * 150.00249 * 3 2 1 7 7 C 1.37880 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00413 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47629 * 180.02562 * 9 7 2 11 11 C 1.35946 * 117.00052 * 180.02562 * 10 9 7 12 12 C 1.38340 * 120.20521 * 359.71677 * 11 10 9 13 13 C 1.38716 * 120.38454 * 180.31611 * 12 11 10 14 14 C 1.36607 * 120.71643 * 359.94080 * 13 12 11 15 15 C 1.39842 * 119.98809 * 0.04605 * 14 13 12 16 16 N 1.35771 * 133.56941 * 179.97438 * 15 14 13 17 17 C 1.30127 * 109.67066 * 180.02562 * 16 15 14 18 18 N 1.35970 * 110.08541 * 359.97438 * 17 16 15 19 19 H 0.97004 * 126.36031 * 180.02562 * 18 17 16 20 20 C 1.38183 * 107.27444 * 359.97438 * 18 17 16 21 21 H 0.97001 * 119.99630 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46968 * 59.99794 * 9 7 2 23 23 H 1.09001 * 109.46750 * 300.00705 * 9 7 2 24 24 H 1.08007 * 119.80901 * 0.26208 * 12 11 10 25 25 H 1.08000 * 119.64313 * 179.97438 * 13 12 11 26 26 H 1.07997 * 120.01092 * 180.02562 * 14 13 12 27 27 H 1.08000 * 124.95583 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5854 -0.0005 11 6 1.6600 -4.8416 -0.0011 12 6 0.2892 -5.0277 0.0043 13 6 -0.2450 -6.3079 0.0104 14 6 0.5701 -7.4041 0.0099 15 6 1.9591 -7.2424 0.0043 16 7 3.0024 -8.1112 0.0028 17 6 4.1231 -7.4499 -0.0027 18 7 3.8763 -6.1128 -0.0058 19 1 4.5402 -5.4055 -0.0103 20 6 2.5043 -5.9488 -0.0024 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8896 24 1 -0.3689 -4.1713 0.0047 25 1 -1.3170 -6.4393 0.0150 26 1 0.1419 -8.3956 0.0143 27 1 5.1059 -7.8978 -0.0046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260112030.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = 24.073086 kcal Electronic energy + Delta-G solvation = -13771.124177 eV Core-core repulsion = 11301.730339 eV Total energy + Delta-G solvation = -2469.393838 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.77139 -38.44462 -35.91156 -33.07617 -32.34656 -29.37901 -28.73016 -27.42217 -23.55225 -22.43185 -21.83884 -20.62562 -18.19019 -16.95946 -16.48357 -16.01201 -15.24678 -14.87649 -14.62061 -14.16699 -14.13812 -13.50674 -12.76041 -12.18710 -11.49040 -11.42786 -11.10319 -11.05992 -11.01225 -10.62032 -10.31886 -9.90715 -9.68200 -9.36131 -8.63126 -8.11096 -7.17175 -6.30949 -4.35367 1.41048 1.89492 3.10700 3.19019 3.20975 3.24504 3.28438 4.05519 4.26507 4.41759 4.49020 5.02751 5.06287 5.43008 5.57287 5.64373 5.85819 6.09288 6.29761 6.55384 6.81481 6.89515 6.95328 7.08908 7.16376 7.57777 7.59594 7.87935 8.05729 8.36944 8.75477 9.29987 10.80151 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.048692 B = 0.006860 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.900060 B = 4080.518505 C = 4640.270440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.195 3.805 10 O -0.323 6.323 11 C 0.166 3.834 12 C -0.215 4.215 13 C -0.077 4.077 14 C -0.131 4.131 15 C 0.078 3.922 16 N -0.506 5.506 17 C 0.253 3.747 18 N -0.588 5.588 19 H 0.426 0.574 20 C 0.012 3.988 21 H 0.268 0.732 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.140 0.860 25 H 0.126 0.874 26 H 0.122 0.878 27 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 -10.329 -0.006 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.122 3.878 10 O -0.236 6.236 11 C 0.116 3.884 12 C -0.236 4.236 13 C -0.098 4.098 14 C -0.151 4.151 15 C -0.041 4.041 16 N -0.228 5.228 17 C -0.034 4.034 18 N -0.199 5.199 19 H 0.265 0.735 20 C -0.097 4.097 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.242 -11.010 0.002 11.799 hybrid contribution 0.618 2.182 -0.016 2.267 sum 4.860 -8.829 -0.014 10.078 Atomic orbital electron populations 1.69946 1.06111 1.27705 1.49232 1.24930 0.95057 0.99521 0.94601 0.86247 0.79586 0.81770 0.78394 1.20266 1.20822 1.19565 1.20938 0.94131 0.88758 1.52651 0.91333 1.20669 0.88591 0.81384 0.97131 1.86069 1.39465 1.11737 1.86342 1.18108 0.90654 0.84183 0.95465 1.21116 0.93059 0.98857 1.10537 1.20406 0.99413 0.91335 0.98620 1.19712 0.89187 0.99036 1.07191 1.18860 0.93885 0.87302 1.04021 1.70428 0.96960 1.32417 1.22979 1.25223 0.99566 0.79460 0.99183 1.43088 1.06264 1.09017 1.61561 0.73495 1.18315 0.83584 0.95122 1.12657 0.92233 0.95831 0.95829 0.84238 0.85631 0.85953 0.77070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 15 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.53 -14.73 9.43 -34.44 -0.32 -15.06 15 8 H 0.07 1.89 7.81 -52.48 -0.41 1.48 15 9 C 0.19 5.08 4.50 36.00 0.16 5.24 15 10 O -0.32 -7.65 10.13 -19.57 -0.20 -7.85 15 11 C 0.17 3.45 6.70 -39.17 -0.26 3.19 15 12 C -0.21 -4.12 9.04 -39.37 -0.36 -4.48 15 13 C -0.08 -1.26 9.96 -39.99 -0.40 -1.65 15 14 C -0.13 -2.15 10.05 -39.57 -0.40 -2.55 15 15 C 0.08 1.41 7.23 -84.72 -0.61 0.80 15 16 N -0.51 -8.33 11.27 -12.07 -0.14 -8.46 15 17 C 0.25 3.24 12.97 -89.83 -1.16 2.08 15 18 N -0.59 -8.63 6.24 -11.68 -0.07 -8.71 15 19 H 0.43 5.24 8.96 -40.82 -0.37 4.88 15 20 C 0.01 0.23 7.25 -83.83 -0.61 -0.38 15 21 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 22 H 0.02 0.64 7.67 -51.93 -0.40 0.24 15 23 H 0.02 0.64 7.66 -51.93 -0.40 0.24 15 24 H 0.14 2.75 6.29 -52.48 -0.33 2.42 15 25 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.12 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.21 1.51 8.06 -52.49 -0.42 1.09 15 LS Contribution 245.24 15.07 3.70 3.70 Total: -1.00 -31.80 245.24 -7.36 -39.16 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.31 Total: 2.21 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -4.06 Total: -11.22 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.53 Total: -41.86 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.20 Total: -7.85 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.80 -7.36 -39.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112030.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.233 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds