Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99889 * 2 1 4 4 H 1.48496 * 109.47173 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47279 * 30.00452 * 3 2 1 6 6 H 1.48505 * 109.46812 * 150.00249 * 3 2 1 7 7 C 1.37880 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00413 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47629 * 180.02562 * 9 7 2 11 11 C 1.35946 * 117.00052 * 180.02562 * 10 9 7 12 12 C 1.38340 * 120.20521 * 359.71677 * 11 10 9 13 13 C 1.38716 * 120.38454 * 180.31611 * 12 11 10 14 14 C 1.36607 * 120.71643 * 359.94080 * 13 12 11 15 15 C 1.39842 * 119.98809 * 0.04605 * 14 13 12 16 16 N 1.35771 * 133.56941 * 179.97438 * 15 14 13 17 17 C 1.30127 * 109.67066 * 180.02562 * 16 15 14 18 18 N 1.35970 * 110.08541 * 359.97438 * 17 16 15 19 19 H 0.97004 * 126.36031 * 180.02562 * 18 17 16 20 20 C 1.38183 * 107.27444 * 359.97438 * 18 17 16 21 21 H 0.97001 * 119.99630 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46968 * 59.99794 * 9 7 2 23 23 H 1.09001 * 109.46750 * 300.00705 * 9 7 2 24 24 H 1.08007 * 119.80901 * 0.26208 * 12 11 10 25 25 H 1.08000 * 119.64313 * 179.97438 * 13 12 11 26 26 H 1.07997 * 120.01092 * 180.02562 * 14 13 12 27 27 H 1.08000 * 124.95583 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5854 -0.0005 11 6 1.6600 -4.8416 -0.0011 12 6 0.2892 -5.0277 0.0043 13 6 -0.2450 -6.3079 0.0104 14 6 0.5701 -7.4041 0.0099 15 6 1.9591 -7.2424 0.0043 16 7 3.0024 -8.1112 0.0028 17 6 4.1231 -7.4499 -0.0027 18 7 3.8763 -6.1128 -0.0058 19 1 4.5402 -5.4055 -0.0103 20 6 2.5043 -5.9488 -0.0024 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8896 24 1 -0.3689 -4.1713 0.0047 25 1 -1.3170 -6.4393 0.0150 26 1 0.1419 -8.3956 0.0143 27 1 5.1059 -7.8978 -0.0046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260112030.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = 3.336690 kcal Electronic energy + Delta-G solvation = -13772.023374 eV Core-core repulsion = 11301.730339 eV Total energy + Delta-G solvation = -2470.293035 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.03377 -40.08114 -37.36134 -35.11338 -33.67865 -30.88936 -30.14108 -29.30099 -25.42148 -23.76737 -23.23436 -22.03129 -19.66477 -18.56926 -18.27878 -17.45919 -16.80090 -16.64204 -16.07934 -15.75126 -15.65070 -14.75596 -14.43054 -13.82690 -13.20249 -13.07731 -12.83131 -12.70102 -12.60605 -12.16198 -12.13478 -11.42712 -11.20860 -11.17354 -10.68891 -9.44068 -8.64942 -8.41109 -6.55766 0.07656 0.52028 1.38266 1.40782 1.52485 1.88035 2.05747 2.23176 2.63196 2.88075 2.94016 3.38593 3.87426 4.09283 4.17794 4.47135 4.50664 4.66561 4.82720 4.95608 4.96146 5.25872 5.47420 5.50122 5.56877 5.79427 5.84241 6.44329 6.49123 6.69474 6.88504 7.15992 8.71036 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.048692 B = 0.006860 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.900060 B = 4080.518505 C = 4640.270440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.213 3.787 10 O -0.337 6.337 11 C 0.127 3.873 12 C -0.225 4.225 13 C -0.075 4.075 14 C -0.124 4.124 15 C 0.065 3.935 16 N -0.535 5.535 17 C 0.283 3.717 18 N -0.588 5.588 19 H 0.436 0.564 20 C -0.010 4.010 21 H 0.274 0.726 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.123 0.877 25 H 0.160 0.840 26 H 0.151 0.849 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -11.209 -0.012 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.085 0.915 9 C 0.140 3.860 10 O -0.251 6.251 11 C 0.078 3.922 12 C -0.246 4.246 13 C -0.095 4.095 14 C -0.144 4.144 15 C -0.053 4.053 16 N -0.256 5.256 17 C -0.003 4.003 18 N -0.199 5.199 19 H 0.277 0.723 20 C -0.120 4.120 21 H 0.083 0.917 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.141 0.859 25 H 0.178 0.822 26 H 0.169 0.831 27 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.567 -11.913 -0.005 13.150 hybrid contribution 0.239 2.260 -0.015 2.273 sum 5.807 -9.653 -0.019 11.265 Atomic orbital electron populations 1.70054 1.07737 1.29084 1.49323 1.25945 0.96003 1.03306 0.93447 0.85117 0.78340 0.76665 0.78910 1.19218 1.19820 1.18743 1.21286 0.94317 0.90063 1.53840 0.91506 1.20202 0.88401 0.82257 0.95148 1.85987 1.38915 1.12558 1.87674 1.18444 0.91973 0.83432 0.98318 1.21191 0.92554 0.99868 1.10968 1.20697 1.01222 0.89846 0.97758 1.20123 0.88873 1.00246 1.05136 1.19287 0.95050 0.87267 1.03744 1.70483 0.97490 1.32582 1.25088 1.26424 1.00893 0.78314 0.94691 1.43211 1.05036 1.10286 1.61376 0.72344 1.18408 0.85436 0.94629 1.13487 0.91680 0.97861 0.97858 0.85946 0.82241 0.83134 0.71239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.71 13.29 21.45 0.28 -53.43 15 2 C 0.01 0.71 5.46 84.65 0.46 1.17 15 3 Si 0.99 42.73 29.54 68.60 2.03 44.76 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 7 C -0.56 -32.14 9.43 25.60 0.24 -31.90 15 8 H 0.07 3.76 7.81 -2.91 -0.02 3.74 15 9 C 0.21 11.76 4.50 71.23 0.32 12.08 15 10 O -0.34 -16.79 10.13 -92.94 -0.94 -17.73 15 11 C 0.13 5.47 6.70 22.53 0.15 5.62 15 12 C -0.22 -8.98 9.04 22.41 0.20 -8.77 15 13 C -0.08 -2.38 9.96 22.00 0.22 -2.16 15 14 C -0.12 -3.86 10.05 22.28 0.22 -3.64 15 15 C 0.07 2.27 7.23 39.44 0.29 2.56 15 16 N -0.53 -16.21 11.27 -192.10 -2.17 -18.38 15 17 C 0.28 6.31 12.97 180.07 2.34 8.65 15 18 N -0.59 -16.33 6.24 -190.86 -1.19 -17.52 15 19 H 0.44 10.16 8.96 -92.71 -0.83 9.33 15 20 C -0.01 -0.37 7.25 38.90 0.28 -0.08 15 21 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 22 H 0.00 0.21 7.67 -2.39 -0.02 0.19 15 23 H 0.00 0.21 7.66 -2.39 -0.02 0.19 15 24 H 0.12 5.19 6.29 -2.91 -0.02 5.18 15 25 H 0.16 3.85 8.06 -2.91 -0.02 3.83 15 26 H 0.15 3.79 8.06 -2.91 -0.02 3.76 15 27 H 0.27 2.37 8.06 -2.91 -0.02 2.34 15 Total: -1.00 -70.63 245.24 3.11 -67.52 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.37 Total: 11.24 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.72 Total: -16.47 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -3.07 Total: -89.32 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.94 Total: -17.73 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -70.63 3.11 -67.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112030.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.860 kcal (2) G-P(sol) polarization free energy of solvation -70.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds