Wall clock time and date at job start Mon Mar 30 2020 02:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86800 * 119.99693 * 2 1 4 4 H 1.48499 * 109.47306 * 269.99626 * 3 2 1 5 5 H 1.48501 * 109.47322 * 30.00051 * 3 2 1 6 6 H 1.48501 * 109.46909 * 150.00107 * 3 2 1 7 7 C 1.40311 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00509 * 359.97438 * 7 2 1 9 9 C 1.43198 * 119.99653 * 180.02562 * 7 2 1 10 10 C 3.52364 * 159.82876 * 179.97438 * 2 1 3 11 11 C 4.93161 * 165.73733 * 179.97438 * 2 1 3 12 12 S 1.81394 * 109.47175 * 297.08921 * 11 10 9 13 13 C 1.76199 * 103.00056 * 180.02562 * 12 11 10 14 14 C 1.38975 * 120.07816 * 180.02562 * 13 12 11 15 15 C 1.38086 * 119.91892 * 179.97438 * 14 13 12 16 16 C 1.38310 * 120.07752 * 359.97438 * 15 14 13 17 17 C 1.38301 * 120.16067 * 0.02562 * 16 15 14 18 18 C 1.38081 * 120.08205 * 359.97438 * 17 16 15 19 19 H 0.96998 * 120.00363 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46747 * 177.08847 * 11 10 9 21 21 H 1.09004 * 109.47176 * 57.08799 * 11 10 9 22 22 H 1.07995 * 120.04427 * 359.69664 * 14 13 12 23 23 H 1.08000 * 119.96089 * 179.97438 * 15 14 13 24 24 H 1.07995 * 119.91521 * 179.97438 * 16 15 14 25 25 H 1.07996 * 119.95950 * 179.97438 * 17 16 15 26 26 H 1.07997 * 120.04201 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4884 2.0465 -1.4000 5 1 1.4383 2.6527 0.7000 6 1 3.5384 1.4402 0.7000 7 6 2.0085 -1.2151 -0.0005 8 1 1.4686 -2.1504 -0.0005 9 6 3.4404 -1.2151 0.0000 10 6 4.6144 -1.2150 0.0005 11 6 6.0865 -1.2150 0.0005 12 16 6.6912 -1.9937 1.5231 13 6 8.4420 -1.9026 1.3467 14 6 9.2696 -2.4113 2.3405 15 6 10.6412 -2.3385 2.1986 16 6 11.1915 -1.7608 1.0688 17 6 10.3710 -1.2535 0.0778 18 6 8.9985 -1.3228 0.2129 19 1 -0.4850 0.8400 -0.0004 20 1 6.4497 -0.1886 -0.0517 21 1 6.4499 -1.7734 -0.8622 22 1 8.8406 -2.8588 3.2248 23 1 11.2850 -2.7333 2.9707 24 1 12.2646 -1.7049 0.9607 25 1 10.8042 -0.8027 -0.8028 26 1 8.3584 -0.9261 -0.5612 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260135546.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:13 Heat of formation + Delta-G solvation = 52.089142 kcal Electronic energy + Delta-G solvation = -10882.584135 eV Core-core repulsion = 8824.865285 eV Total energy + Delta-G solvation = -2057.718850 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.81434 -33.80505 -32.44776 -31.03512 -30.86423 -28.61665 -24.88032 -22.64948 -22.40722 -18.54363 -17.68877 -16.11232 -15.63194 -14.99580 -14.53676 -14.35136 -13.85664 -13.42701 -13.23281 -13.05854 -12.79356 -11.90659 -11.57117 -11.32105 -11.19939 -11.11936 -10.16117 -10.01151 -9.68194 -9.60199 -8.96544 -8.68951 -8.38100 -7.08131 -6.81122 -4.63841 1.29076 1.39445 1.79147 2.84886 3.05349 3.12172 3.27168 3.75681 4.00549 4.05597 4.32177 4.88221 4.94573 5.09587 5.36600 5.42668 5.52014 5.66950 5.77086 5.88769 5.97904 6.01469 6.36755 6.39779 6.50291 6.93622 7.17994 7.93797 8.36819 8.74256 9.41418 10.20982 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.062916 B = 0.005397 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.933409 B = 5186.617814 C = 5382.588621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.095 3.905 3 Si 0.896 3.104 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.423 4.423 8 H 0.103 0.897 9 C 0.043 3.957 10 C -0.430 4.430 11 C 0.079 3.921 12 S -0.137 6.137 13 C -0.076 4.076 14 C -0.109 4.109 15 C -0.104 4.104 16 C -0.140 4.140 17 C -0.101 4.101 18 C -0.140 4.140 19 H 0.286 0.714 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.125 0.875 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.462 -0.255 1.483 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.122 4.122 3 Si 0.719 3.281 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.455 4.455 8 H 0.120 0.880 9 C 0.037 3.963 10 C -0.435 4.435 11 C -0.066 4.066 12 S 0.114 5.886 13 C -0.189 4.189 14 C -0.133 4.133 15 C -0.123 4.123 16 C -0.161 4.161 17 C -0.120 4.120 18 C -0.164 4.164 19 H 0.096 0.904 20 H 0.101 0.899 21 H 0.099 0.901 22 H 0.143 0.857 23 H 0.140 0.860 24 H 0.137 0.863 25 H 0.139 0.861 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.476 -0.605 2.389 16.659 hybrid contribution 1.012 1.259 -1.020 1.910 sum 17.488 0.653 1.369 17.554 Atomic orbital electron populations 1.69465 1.07473 1.29923 1.38700 1.25753 0.94733 1.00658 0.91014 0.86403 0.81399 0.80398 0.79867 1.19077 1.20162 1.17190 1.18056 0.83317 0.95332 1.48804 0.87955 1.20003 0.91050 0.95104 0.90136 1.19590 0.90996 1.06552 1.26403 1.19661 0.90911 1.01369 0.94695 1.86220 0.94722 1.75305 1.32352 1.22162 0.98714 1.00692 0.97363 1.20800 0.93014 1.01053 0.98446 1.21049 0.94456 0.99052 0.97778 1.21079 0.99518 1.00698 0.94784 1.21036 0.93151 0.99048 0.98810 1.21261 0.95802 1.01798 0.97554 0.90380 0.89893 0.90132 0.85716 0.85956 0.86271 0.86065 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.57 13.92 55.57 0.77 -21.79 15 2 C 0.09 2.56 5.52 -17.26 -0.10 2.47 15 3 Si 0.90 20.76 28.00 -169.99 -4.76 16.00 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 6 H -0.25 -5.97 7.03 56.52 0.40 -5.57 15 7 C -0.42 -11.98 10.17 -36.88 -0.38 -12.35 15 8 H 0.10 2.99 8.06 -52.49 -0.42 2.57 15 9 C 0.04 1.17 11.40 -38.84 -0.44 0.73 15 10 C -0.43 -10.65 13.35 -37.12 -0.50 -11.15 15 11 C 0.08 1.55 4.82 34.37 0.17 1.72 15 12 S -0.14 -2.56 21.88 -107.50 -2.35 -4.91 15 13 C -0.08 -1.19 6.11 -39.04 -0.24 -1.43 15 14 C -0.11 -1.50 9.79 -39.36 -0.39 -1.88 15 15 C -0.10 -1.18 10.04 -39.61 -0.40 -1.58 15 16 C -0.14 -1.52 10.04 -39.53 -0.40 -1.92 15 17 C -0.10 -1.19 10.04 -39.62 -0.40 -1.59 15 18 C -0.14 -1.97 9.36 -39.37 -0.37 -2.34 15 19 H 0.29 7.02 8.29 -40.82 -0.34 6.68 15 20 H 0.08 1.49 7.75 -51.92 -0.40 1.09 15 21 H 0.08 1.41 7.75 -51.92 -0.40 1.01 15 22 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 23 H 0.12 1.06 8.06 -52.49 -0.42 0.64 15 24 H 0.12 0.98 8.06 -52.49 -0.42 0.55 15 25 H 0.12 1.13 8.06 -52.49 -0.42 0.70 15 26 H 0.12 1.68 5.88 -52.49 -0.31 1.37 15 LS Contribution 255.65 15.07 3.85 3.85 Total: -1.00 -28.96 255.65 -8.28 -37.24 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -2.37 Total: -1.04 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -3.43 Total: -29.34 kcal Atomic # 7 Polarization: -22.57 SS G_CDS: 0.77 Total: -21.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.76 Total: 16.00 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.35 Total: -4.91 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.96 -8.28 -37.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260135546.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.324 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds