Wall clock time and date at job start Mon Mar 30 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.35972 * 126.36457 * 264.68930 * 10 9 7 12 12 N 1.30127 * 110.07930 * 179.81679 * 11 10 9 13 13 C 1.35783 * 109.66531 * 0.45328 * 12 11 10 14 14 C 1.39871 * 133.56055 * 179.72732 * 13 12 11 15 15 C 1.36573 * 119.98421 * 180.02562 * 14 13 12 16 16 C 1.38748 * 120.72162 * 0.02562 * 15 14 13 17 17 C 1.38310 * 120.38057 * 359.97429 * 16 15 14 18 18 O 1.35948 * 120.20293 * 180.02562 * 17 16 15 19 19 C 1.38182 * 126.35973 * 85.00101 * 10 9 7 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.07998 * 124.95698 * 359.97438 * 11 10 9 24 24 H 1.08002 * 120.00729 * 0.02562 * 14 13 12 25 25 H 1.08005 * 119.64094 * 179.97438 * 15 14 13 26 26 H 1.07999 * 119.81404 * 179.97438 * 16 15 14 27 27 H 0.96698 * 114.00192 * 269.99852 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6498 -4.2913 -1.0897 12 7 3.4900 -5.2163 -0.7267 13 6 3.6319 -5.2004 0.6236 14 6 4.3861 -5.9615 1.5226 15 6 4.3177 -5.7020 2.8617 16 6 3.5047 -4.6875 3.3464 17 6 2.7493 -3.9210 2.4776 18 8 1.9544 -2.9276 2.9565 19 6 2.8089 -4.1724 1.1091 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.3527 -4.0902 -2.1084 24 1 5.0225 -6.7542 1.1578 25 1 4.9022 -6.2934 3.5509 26 1 3.4614 -4.4952 4.4083 27 1 1.0556 -3.2122 3.1717 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260168160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:56 Heat of formation + Delta-G solvation = 24.689856 kcal Electronic energy + Delta-G solvation = -14208.859406 eV Core-core repulsion = 11739.492313 eV Total energy + Delta-G solvation = -2469.367093 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.46062 -37.80740 -35.85072 -33.79328 -32.08686 -29.13566 -28.77864 -27.05899 -23.33409 -22.63002 -21.60135 -20.07614 -17.51606 -16.87882 -16.35341 -16.01038 -15.27785 -14.66277 -14.46079 -13.85727 -13.66751 -13.04509 -12.48942 -12.01972 -11.88095 -11.58110 -11.12892 -10.96153 -10.89607 -10.35917 -10.19282 -10.09097 -9.44074 -9.25554 -8.66175 -7.82751 -7.35736 -6.29685 -4.36475 1.39671 2.03461 3.22328 3.25738 3.27715 3.38029 3.64834 4.26579 4.28204 4.71474 4.82544 5.05588 5.30431 5.38942 5.70347 5.88548 5.96990 6.14449 6.34089 6.73256 6.81018 6.88489 6.93328 7.25173 7.35910 7.61928 7.82357 7.94810 8.16297 8.51004 8.67695 9.30413 10.78203 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035631 B = 0.009540 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.651222 B = 2934.402601 C = 3278.273956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.241 3.759 10 N -0.451 5.451 11 C 0.259 3.741 12 N -0.523 5.523 13 C 0.050 3.950 14 C -0.085 4.085 15 C -0.122 4.122 16 C -0.155 4.155 17 C 0.134 3.866 18 O -0.481 6.481 19 C 0.026 3.974 20 H 0.268 0.732 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.207 0.793 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -7.835 3.851 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.122 3.878 10 N -0.134 5.134 11 C -0.027 4.027 12 N -0.244 5.244 13 C -0.071 4.071 14 C -0.105 4.105 15 C -0.143 4.143 16 C -0.175 4.175 17 C 0.087 3.913 18 O -0.289 6.289 19 C -0.088 4.088 20 H 0.078 0.922 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.223 0.777 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.145 0.855 27 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.379 -7.744 3.216 9.040 hybrid contribution -0.511 1.415 0.490 1.582 sum 2.868 -6.329 3.706 7.875 Atomic orbital electron populations 1.69895 1.06029 1.27771 1.49344 1.24877 0.94936 0.99419 0.94230 0.86424 0.79486 0.81861 0.78996 1.20000 1.20948 1.19889 1.21170 0.93522 0.89622 1.52812 0.92031 1.19778 0.86721 0.81641 0.99637 1.46215 1.35420 1.27555 1.04242 1.25215 0.93557 0.89759 0.94135 1.70430 1.20129 1.23280 1.10514 1.19059 0.99845 0.97475 0.90710 1.19864 0.99393 0.99635 0.91575 1.20323 1.00523 0.98687 0.94744 1.20981 1.00577 0.96884 0.99082 1.17489 0.96387 0.90139 0.87276 1.84987 1.25663 1.33136 1.85115 1.19432 1.01111 0.98353 0.89877 0.92242 0.93278 0.93256 0.77673 0.86026 0.85823 0.85500 0.76393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.63 13.29 55.43 0.74 -23.89 15 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 3 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.53 -14.41 9.39 -34.44 -0.32 -14.74 15 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 9 C 0.24 5.81 5.57 -5.19 -0.03 5.78 15 10 N -0.45 -9.93 2.79 -116.98 -0.33 -10.26 15 11 C 0.26 5.14 12.49 -89.83 -1.12 4.02 15 12 N -0.52 -10.77 11.27 -12.07 -0.14 -10.90 15 13 C 0.05 1.03 7.23 -84.71 -0.61 0.41 15 14 C -0.08 -1.43 10.05 -39.57 -0.40 -1.83 15 15 C -0.12 -1.81 9.96 -39.99 -0.40 -2.21 15 16 C -0.15 -2.50 9.97 -39.37 -0.39 -2.89 15 17 C 0.13 2.62 6.72 -39.17 -0.26 2.36 15 18 O -0.48 -9.43 12.28 -19.58 -0.24 -9.67 15 19 C 0.03 0.55 6.88 -83.83 -0.58 -0.03 15 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.05 1.22 7.29 -51.93 -0.38 0.85 15 22 H 0.05 1.19 8.13 -51.93 -0.42 0.77 15 23 H 0.21 3.26 8.06 -52.49 -0.42 2.84 15 24 H 0.12 1.76 8.06 -52.49 -0.42 1.34 15 25 H 0.12 1.39 8.06 -52.48 -0.42 0.96 15 26 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.38 5.74 9.06 45.56 0.41 6.16 15 LS Contribution 247.03 15.07 3.72 3.72 Total: -1.00 -30.97 247.03 -7.10 -38.07 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -1.62 Total: 4.12 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -4.21 Total: -7.36 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.27 Total: -45.05 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.24 Total: -9.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.97 -7.10 -38.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260168160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.758 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds