Wall clock time and date at job start Mon Mar 30 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.35972 * 126.36457 * 264.68930 * 10 9 7 12 12 N 1.30127 * 110.07930 * 179.81679 * 11 10 9 13 13 C 1.35783 * 109.66531 * 0.45328 * 12 11 10 14 14 C 1.39871 * 133.56055 * 179.72732 * 13 12 11 15 15 C 1.36573 * 119.98421 * 180.02562 * 14 13 12 16 16 C 1.38748 * 120.72162 * 0.02562 * 15 14 13 17 17 C 1.38310 * 120.38057 * 359.97429 * 16 15 14 18 18 O 1.35948 * 120.20293 * 180.02562 * 17 16 15 19 19 C 1.38182 * 126.35973 * 85.00101 * 10 9 7 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.07998 * 124.95698 * 359.97438 * 11 10 9 24 24 H 1.08002 * 120.00729 * 0.02562 * 14 13 12 25 25 H 1.08005 * 119.64094 * 179.97438 * 15 14 13 26 26 H 1.07999 * 119.81404 * 179.97438 * 16 15 14 27 27 H 0.96698 * 114.00192 * 269.99852 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6498 -4.2913 -1.0897 12 7 3.4900 -5.2163 -0.7267 13 6 3.6319 -5.2004 0.6236 14 6 4.3861 -5.9615 1.5226 15 6 4.3177 -5.7020 2.8617 16 6 3.5047 -4.6875 3.3464 17 6 2.7493 -3.9210 2.4776 18 8 1.9544 -2.9276 2.9565 19 6 2.8089 -4.1724 1.1091 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.3527 -4.0902 -2.1084 24 1 5.0225 -6.7542 1.1578 25 1 4.9022 -6.2934 3.5509 26 1 3.4614 -4.4952 4.4083 27 1 1.0556 -3.2122 3.1717 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260168160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:56 Heat of formation + Delta-G solvation = 4.687974 kcal Electronic energy + Delta-G solvation = -14209.726753 eV Core-core repulsion = 11739.492313 eV Total energy + Delta-G solvation = -2470.234439 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.95808 -39.23428 -37.29125 -35.63137 -33.89530 -30.64625 -30.17922 -28.87271 -25.23473 -24.04966 -23.04357 -21.60365 -19.07334 -18.74559 -18.01755 -17.48256 -16.66848 -16.50825 -15.98186 -15.35213 -15.16395 -14.56314 -14.36997 -13.77238 -13.35743 -13.17134 -12.78015 -12.64978 -12.46470 -12.22310 -11.90253 -11.67703 -11.01390 -10.96283 -10.70807 -9.28025 -8.83020 -8.33315 -6.48998 0.01173 0.64982 1.35420 1.37137 1.45023 1.84064 2.06873 2.34354 2.88123 2.97532 3.34347 3.44600 3.85600 4.18099 4.30219 4.49670 4.55794 4.79238 4.85361 4.98628 5.31188 5.49016 5.53227 5.56164 5.74882 5.82271 5.94667 6.29244 6.60330 6.81221 7.00490 7.21392 8.71963 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035631 B = 0.009540 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.651222 B = 2934.402601 C = 3278.273956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.041 0.959 9 C 0.258 3.742 10 N -0.467 5.467 11 C 0.250 3.750 12 N -0.533 5.533 13 C 0.026 3.974 14 C -0.091 4.091 15 C -0.104 4.104 16 C -0.139 4.139 17 C 0.101 3.899 18 O -0.501 6.501 19 C -0.009 4.009 20 H 0.272 0.728 21 H 0.035 0.965 22 H 0.045 0.955 23 H 0.235 0.765 24 H 0.147 0.853 25 H 0.173 0.827 26 H 0.158 0.842 27 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -8.427 4.907 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.059 0.941 9 C 0.138 3.862 10 N -0.152 5.152 11 C -0.035 4.035 12 N -0.254 5.254 13 C -0.094 4.094 14 C -0.110 4.110 15 C -0.125 4.125 16 C -0.159 4.159 17 C 0.054 3.946 18 O -0.311 6.311 19 C -0.121 4.121 20 H 0.081 0.919 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.251 0.749 24 H 0.164 0.836 25 H 0.190 0.810 26 H 0.176 0.824 27 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.614 -8.367 4.280 10.470 hybrid contribution -0.847 1.495 0.252 1.737 sum 3.767 -6.872 4.531 9.052 Atomic orbital electron populations 1.69963 1.07011 1.28706 1.49662 1.25582 0.95733 1.02258 0.93746 0.85543 0.78479 0.78535 0.78749 1.19405 1.19632 1.20395 1.21291 0.92668 0.91351 1.53236 0.94086 1.19333 0.86697 0.81608 0.98524 1.46074 1.36043 1.27725 1.05372 1.25827 0.93335 0.89406 0.94916 1.70419 1.20418 1.23542 1.11065 1.19598 1.00749 0.98124 0.90949 1.20311 0.98998 0.99699 0.92016 1.20867 0.99214 0.97723 0.94648 1.21425 0.98636 0.95630 1.00164 1.17912 0.97913 0.91450 0.87278 1.84933 1.26832 1.34268 1.85101 1.19948 1.02133 0.99337 0.90653 0.91869 0.94717 0.93747 0.74940 0.83551 0.80973 0.82444 0.74913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.80 13.29 21.45 0.28 -50.51 15 2 C 0.03 1.52 5.46 84.66 0.46 1.98 15 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 15 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 7 C -0.55 -30.23 9.39 25.60 0.24 -29.99 15 8 H 0.04 2.39 7.81 -2.91 -0.02 2.36 15 9 C 0.26 12.86 5.57 85.63 0.48 13.34 15 10 N -0.47 -21.09 2.79 -524.00 -1.46 -22.55 15 11 C 0.25 10.06 12.49 180.07 2.25 12.31 15 12 N -0.53 -21.91 11.27 -192.10 -2.17 -24.08 15 13 C 0.03 1.04 7.23 39.44 0.29 1.33 15 14 C -0.09 -2.81 10.05 22.28 0.22 -2.58 15 15 C -0.10 -2.67 9.96 22.00 0.22 -2.45 15 16 C -0.14 -4.07 9.97 22.41 0.22 -3.85 15 17 C 0.10 3.92 6.72 22.53 0.15 4.07 15 18 O -0.50 -19.87 12.28 -92.96 -1.14 -21.02 15 19 C -0.01 -0.39 6.88 38.90 0.27 -0.12 15 20 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 21 H 0.03 1.80 7.29 -2.39 -0.02 1.79 15 22 H 0.04 2.21 8.13 -2.39 -0.02 2.20 15 23 H 0.23 7.44 8.06 -2.91 -0.02 7.42 15 24 H 0.15 3.74 8.06 -2.91 -0.02 3.71 15 25 H 0.17 2.78 8.06 -2.91 -0.02 2.75 15 26 H 0.16 3.62 8.06 -2.91 -0.02 3.59 15 27 H 0.39 12.22 9.06 -74.06 -0.67 11.54 15 Total: -1.00 -66.73 247.03 2.87 -63.87 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.53 Total: 14.82 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 4.80 Total: -5.96 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.34 Total: -97.14 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -1.14 Total: -21.02 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.73 2.87 -63.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260168160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.555 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds