Wall clock time and date at job start Mon Mar 30 2020 02:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48496 * 109.47104 * 240.00348 * 3 2 1 5 5 H 1.48508 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47308 * 119.99870 * 3 2 1 7 7 C 1.37877 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99525 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46792 * 179.97438 * 9 7 2 11 11 C 1.35947 * 116.99751 * 179.97438 * 10 9 7 12 12 C 1.39231 * 119.83741 * 0.02562 * 11 10 9 13 13 C 1.36546 * 120.61451 * 179.97438 * 12 11 10 14 14 C 1.39756 * 119.96033 * 359.97077 * 13 12 11 15 15 N 1.35869 * 133.51184 * 179.97438 * 14 13 12 16 16 C 1.30058 * 109.64989 * 180.02562 * 15 14 13 17 17 N 1.36144 * 110.09336 * 0.02562 * 16 15 14 18 18 H 0.97004 * 126.35753 * 179.97438 * 17 16 15 19 19 C 1.38065 * 107.29373 * 359.97438 * 17 16 15 20 20 C 1.38307 * 119.83280 * 179.71853 * 11 10 9 21 21 H 0.97005 * 119.99874 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47254 * 60.00652 * 9 7 2 23 23 H 1.08997 * 109.47447 * 300.00125 * 9 7 2 24 24 H 1.07994 * 119.69117 * 359.97242 * 12 11 10 25 25 H 1.07995 * 120.01814 * 179.97438 * 13 12 11 26 26 H 1.08002 * 124.96031 * 179.97438 * 16 15 14 27 27 H 1.08000 * 120.17564 * 359.94912 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.6600 -4.8415 -0.0014 12 6 0.2791 -5.0200 -0.0004 13 6 -0.2599 -6.2745 -0.0005 14 6 0.5771 -7.3938 -0.0022 15 7 0.3482 -8.7330 -0.0024 16 6 1.4818 -9.3705 -0.0039 17 7 2.5162 -8.4853 -0.0042 18 1 3.4610 -8.7049 -0.0049 19 6 1.9709 -7.2169 -0.0034 20 6 2.5056 -5.9359 -0.0084 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5570 0.8896 24 1 -0.3716 -4.1581 0.0005 25 1 -1.3323 -6.4018 0.0007 26 1 1.5874 -10.4453 -0.0039 27 1 3.5763 -5.7946 -0.0150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198181.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:29 Heat of formation + Delta-G solvation = 26.010547 kcal Electronic energy + Delta-G solvation = -13577.975990 eV Core-core repulsion = 11108.666167 eV Total energy + Delta-G solvation = -2469.309823 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.77655 -38.67197 -35.44565 -33.01549 -32.72085 -29.83283 -28.54589 -27.16577 -23.45399 -22.73778 -21.41402 -21.01200 -18.00519 -17.19892 -16.74132 -15.71046 -15.10125 -15.09853 -14.39287 -14.36564 -13.79983 -13.51020 -12.87690 -12.30692 -11.98373 -11.51864 -11.04457 -10.94645 -10.89021 -10.58262 -10.25027 -9.79129 -9.77433 -9.30181 -8.58472 -8.12281 -7.23223 -6.26220 -4.30236 1.35370 1.87045 3.03370 3.07063 3.25209 3.28373 3.31662 4.14351 4.23027 4.42222 4.58906 4.95985 5.10978 5.40024 5.56594 5.65674 5.77065 5.86264 6.39514 6.48696 6.67400 6.80469 6.95136 7.11438 7.12643 7.50485 7.65639 7.93143 8.05158 8.43019 8.81498 9.34945 10.84907 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.082726 B = 0.005650 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.384874 B = 4954.995518 C = 5278.235526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.192 3.808 10 O -0.313 6.313 11 C 0.179 3.821 12 C -0.202 4.202 13 C -0.026 4.026 14 C -0.010 4.010 15 N -0.488 5.488 16 C 0.234 3.766 17 N -0.607 5.607 18 H 0.420 0.580 19 C 0.092 3.908 20 C -0.187 4.187 21 H 0.268 0.732 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.143 0.857 25 H 0.128 0.872 26 H 0.210 0.790 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 -14.090 -0.007 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.088 0.912 9 C 0.119 3.881 10 O -0.226 6.226 11 C 0.129 3.871 12 C -0.222 4.222 13 C -0.045 4.045 14 C -0.126 4.126 15 N -0.208 5.208 16 C -0.053 4.053 17 N -0.221 5.221 18 H 0.258 0.742 19 C -0.018 4.018 20 C -0.210 4.210 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.161 0.839 25 H 0.146 0.854 26 H 0.227 0.773 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.622 -14.187 -0.007 14.427 hybrid contribution 1.407 1.045 0.002 1.753 sum 4.029 -13.142 -0.005 13.746 Atomic orbital electron populations 1.69935 1.06114 1.27782 1.49325 1.24930 0.95055 0.99523 0.94637 0.86297 0.79280 0.81396 0.78978 1.19857 1.20973 1.19854 1.20930 0.94254 0.88726 1.52526 0.91170 1.20707 0.88661 0.81595 0.97119 1.86127 1.39144 1.11564 1.85722 1.18778 0.90981 0.86121 0.91185 1.21130 0.94837 0.98216 1.08023 1.19806 0.99010 0.89142 0.96585 1.18875 0.91032 0.91214 1.11462 1.70287 1.26033 1.03959 1.20521 1.25106 0.81640 0.97024 1.01569 1.43044 1.09946 1.04930 1.64187 0.74210 1.18413 0.93883 0.85933 1.03619 1.18796 0.99440 0.87069 1.15664 0.92216 0.95826 0.95820 0.83932 0.85393 0.77341 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.53 -14.89 9.43 -34.44 -0.32 -15.21 15 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 15 9 C 0.19 5.02 4.49 36.01 0.16 5.18 15 10 O -0.31 -7.51 10.11 -19.57 -0.20 -7.71 15 11 C 0.18 3.68 6.68 -39.19 -0.26 3.42 15 12 C -0.20 -3.87 8.96 -39.82 -0.36 -4.23 15 13 C -0.03 -0.45 10.04 -39.63 -0.40 -0.85 15 14 C -0.01 -0.17 7.23 -84.66 -0.61 -0.78 15 15 N -0.49 -7.75 11.27 -12.01 -0.14 -7.89 15 16 C 0.23 2.67 12.97 -89.73 -1.16 1.50 15 17 N -0.61 -7.04 6.24 -11.75 -0.07 -7.12 15 18 H 0.42 3.21 8.96 -40.82 -0.37 2.84 15 19 C 0.09 1.48 7.30 -83.99 -0.61 0.87 15 20 C -0.19 -3.32 10.01 -39.34 -0.39 -3.72 15 21 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 22 H 0.02 0.64 7.65 -51.93 -0.40 0.24 15 23 H 0.02 0.64 7.65 -51.93 -0.40 0.24 15 24 H 0.14 2.79 6.25 -52.49 -0.33 2.46 15 25 H 0.13 1.96 8.06 -52.49 -0.42 1.53 15 26 H 0.21 1.25 8.06 -52.49 -0.42 0.83 15 27 H 0.13 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 245.14 15.07 3.69 3.69 Total: -1.00 -32.14 245.14 -7.36 -39.50 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -2.30 Total: 0.56 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -4.06 Total: -12.21 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.53 Total: -39.91 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.20 Total: -7.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.14 -7.36 -39.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198181.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.513 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds