Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40339 * 120.32936 * 146.62488 * 3 2 1 5 5 N 1.31348 * 121.29965 * 179.76239 * 4 3 2 6 6 C 1.32628 * 122.07543 * 0.52931 * 5 4 3 7 7 C 1.47638 * 119.76659 * 179.74943 * 6 5 4 8 8 O 1.21488 * 120.00178 * 174.44631 * 7 6 5 9 9 O 1.34789 * 119.99539 * 354.44534 * 7 6 5 10 10 C 1.41833 * 120.47592 * 359.47661 * 6 5 4 11 11 C 1.40904 * 120.66030 * 180.27745 * 10 6 5 12 12 H 1.07997 * 120.00517 * 321.23653 * 11 10 6 13 13 C 1.40340 * 119.99859 * 141.23929 * 11 10 6 14 14 N 1.30593 * 119.99904 * 175.08137 * 13 11 10 15 15 Si 1.86798 * 120.00085 * 355.08297 * 13 11 10 16 16 H 1.48496 * 109.47076 * 89.09720 * 15 13 11 17 17 H 1.48497 * 109.47032 * 209.10059 * 15 13 11 18 18 H 1.48506 * 109.47096 * 329.09613 * 15 13 11 19 19 C 1.39251 * 120.32980 * 326.64624 * 3 2 1 20 20 H 1.08001 * 119.34370 * 0.04028 * 4 3 2 21 21 H 0.96698 * 116.99586 * 179.97438 * 9 7 6 22 22 H 0.96997 * 120.00014 * 180.02562 * 14 13 11 23 23 H 1.08001 * 120.93194 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2762 1.0125 -0.6664 5 7 4.5894 1.0342 -0.6747 6 6 5.3131 0.1032 -0.0677 7 6 6.7870 0.1744 -0.1142 8 8 7.4538 -0.6164 0.5230 9 8 7.3929 1.1169 -0.8635 10 6 4.6813 -0.9573 0.6306 11 6 5.4463 -1.9453 1.2818 12 1 6.3521 -2.3154 0.8248 13 6 5.0311 -2.4486 2.5243 14 7 5.6859 -3.4309 3.0827 15 14 3.5420 -1.7134 3.3795 16 1 2.3161 -2.4265 2.9390 17 1 3.6956 -1.8547 4.8497 18 1 3.4304 -0.2745 3.0295 19 6 3.2716 -1.0030 0.6608 20 1 2.7305 1.7911 -1.1786 21 1 8.3598 1.1243 -0.8620 22 1 5.3988 -3.7790 3.9414 23 1 2.7527 -1.7940 1.1818 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260209342.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = -52.919777 kcal Electronic energy + Delta-G solvation = -13739.511486 eV Core-core repulsion = 11130.945893 eV Total energy + Delta-G solvation = -2608.565593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.33712 -40.01637 -37.66224 -36.86993 -35.95138 -33.62522 -32.83372 -28.19294 -26.28223 -24.03580 -22.89042 -20.29851 -19.08465 -18.88948 -18.21475 -17.33334 -16.64716 -16.41491 -15.41882 -15.20864 -14.90671 -14.59092 -14.20253 -14.03403 -13.93299 -13.70630 -13.33476 -12.96665 -12.73222 -12.27573 -12.03734 -11.53980 -11.13060 -10.52428 -10.37667 -9.89707 -9.05608 -6.76117 -0.60416 0.51727 1.19353 1.28111 1.35831 1.43427 1.52736 1.95715 2.19215 2.36355 2.55199 2.83107 3.27771 3.78209 3.96009 4.31186 4.42896 4.66426 4.99344 5.08689 5.35271 5.59840 5.79299 6.16664 6.19667 6.32195 6.45632 7.08686 7.45232 7.96608 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.017141 C = 0.009590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.755725 B = 1633.103046 C = 2918.890779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.288 3.712 3 C -0.018 4.018 4 C 0.034 3.966 5 N -0.408 5.408 6 C -0.046 4.046 7 C 0.537 3.463 8 O -0.535 6.535 9 O -0.504 6.504 10 C 0.059 3.941 11 C -0.400 4.400 12 H 0.087 0.913 13 C 0.048 3.952 14 N -0.806 5.806 15 Si 0.938 3.062 16 H -0.240 1.240 17 H -0.265 1.265 18 H -0.243 1.243 19 C -0.129 4.129 20 H 0.186 0.814 21 H 0.419 0.581 22 H 0.305 0.695 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 5.014 -1.956 5.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.028 4.028 3 C -0.024 4.024 4 C -0.135 4.135 5 N -0.117 5.117 6 C -0.181 4.181 7 C 0.383 3.617 8 O -0.425 6.425 9 O -0.316 6.316 10 C 0.053 3.947 11 C -0.426 4.426 12 H 0.105 0.895 13 C -0.172 4.172 14 N -0.429 5.429 15 Si 0.759 3.241 16 H -0.165 1.165 17 H -0.190 1.190 18 H -0.166 1.166 19 C -0.158 4.158 20 H 0.203 0.797 21 H 0.279 0.721 22 H 0.117 0.883 23 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.682 5.210 -2.002 6.687 hybrid contribution 0.570 -0.888 0.907 1.391 sum -3.113 4.322 -1.095 5.437 Atomic orbital electron populations 1.81185 1.12254 1.09074 1.09500 1.25480 0.92167 0.92523 0.92614 1.16979 0.84502 0.98670 1.02204 1.22580 0.88524 0.99184 1.03188 1.67104 1.07895 1.23222 1.13453 1.19815 0.90044 0.96079 1.12176 1.20420 0.88276 0.77246 0.75718 1.90896 1.66320 1.41821 1.43462 1.84664 1.28678 1.53434 1.64857 1.18133 0.91760 0.91607 0.93246 1.19878 1.07841 1.12676 1.02244 0.89528 1.26980 0.99618 0.92966 0.97673 1.69499 1.37465 1.18879 1.17082 0.85905 0.78255 0.81693 0.78238 1.16461 1.19020 1.16610 1.21836 0.93291 0.98987 1.01673 0.79741 0.72112 0.88303 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -15.10 18.54 19.00 0.35 -14.75 14 2 C 0.29 9.34 15.35 88.33 1.36 10.70 14 3 C -0.02 -0.61 5.74 -21.28 -0.12 -0.74 14 4 C 0.03 1.13 10.90 85.28 0.93 2.06 14 5 N -0.41 -16.06 10.08 -182.17 -1.84 -17.90 14 6 C -0.05 -2.03 6.81 42.40 0.29 -1.74 14 7 C 0.54 23.19 8.27 70.30 0.58 23.77 14 8 O -0.53 -26.25 14.42 19.87 0.29 -25.96 14 9 O -0.50 -17.12 13.25 -57.00 -0.76 -17.87 14 10 C 0.06 2.67 5.05 -21.04 -0.11 2.56 14 11 C -0.40 -20.18 8.07 23.43 0.19 -19.99 14 12 H 0.09 4.95 6.36 -2.91 -0.02 4.93 14 13 C 0.05 2.28 5.51 85.39 0.47 2.75 14 14 N -0.81 -39.63 13.92 21.89 0.30 -39.33 14 15 Si 0.94 36.02 24.50 68.60 1.68 37.70 14 16 H -0.24 -8.41 6.71 99.48 0.67 -7.75 14 17 H -0.26 -9.64 7.11 99.48 0.71 -8.94 14 18 H -0.24 -9.40 6.65 99.48 0.66 -8.73 14 19 C -0.13 -5.09 6.77 23.21 0.16 -4.94 14 20 H 0.19 4.70 8.06 -2.91 -0.02 4.68 14 21 H 0.42 9.52 9.11 -74.06 -0.67 8.84 14 22 H 0.31 13.24 8.29 -92.71 -0.77 12.47 14 23 H 0.14 5.11 4.94 -2.91 -0.01 5.09 14 Total: -1.00 -57.40 224.40 4.31 -53.08 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.54 Total: 10.59 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 3.74 Total: 14.44 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.18 Total: -71.97 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.47 Total: -43.84 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 1.68 Total: 37.70 kcal Total: -57.40 4.31 -53.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209342.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.162 kcal (2) G-P(sol) polarization free energy of solvation -57.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds