Wall clock time and date at job start Mon Mar 30 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46802 * 299.99580 * 3 2 1 6 6 H 1.48500 * 109.47294 * 59.99801 * 3 2 1 7 7 C 1.37879 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99781 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99834 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47039 * 59.99818 * 9 7 2 11 11 N 1.46906 * 109.46955 * 300.00102 * 9 7 2 12 12 C 1.50699 * 109.47234 * 180.02562 * 9 7 2 13 13 C 1.33988 * 126.94817 * 99.67859 * 12 9 7 14 14 O 1.34465 * 110.15845 * 180.26693 * 13 12 9 15 15 C 1.34787 * 111.00406 * 0.02562 * 14 13 12 16 16 N 1.32511 * 133.20509 * 180.02562 * 15 14 13 17 17 C 1.31634 * 121.71583 * 180.02562 * 16 15 14 18 18 C 1.38599 * 121.59929 * 359.95567 * 17 16 15 19 19 C 1.38298 * 119.31132 * 0.02562 * 18 17 16 20 20 C 1.39503 * 117.98772 * 359.97438 * 19 18 17 21 21 H 0.97002 * 119.99745 * 0.02562 * 1 2 3 22 22 H 1.00896 * 110.99936 * 300.00087 * 11 9 7 23 23 H 1.00898 * 111.00223 * 63.95825 * 11 9 7 24 24 H 1.08001 * 124.92261 * 0.23527 * 13 12 9 25 25 H 1.07999 * 119.19938 * 179.97438 * 17 16 15 26 26 H 1.07999 * 120.35071 * 180.02562 * 18 17 16 27 27 H 1.07999 * 121.00884 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6242 -2.5574 -0.8880 11 7 0.4071 -2.5761 1.2016 12 6 2.2305 -3.6445 0.0027 13 6 2.6170 -4.3727 1.0589 14 8 3.5076 -5.3053 0.6779 15 6 3.7472 -5.2319 -0.6465 16 7 4.5275 -5.9206 -1.4667 17 6 4.5892 -5.6497 -2.7534 18 6 3.8396 -4.6295 -3.3175 19 6 3.0063 -3.8761 -2.5110 20 6 2.9587 -4.1829 -1.1510 21 1 -0.4850 0.8401 -0.0004 22 1 0.9654 -2.5241 2.0404 23 1 -0.3003 -1.8567 1.1928 24 1 2.2648 -4.2309 2.0700 25 1 5.2395 -6.2368 -3.3849 26 1 3.9055 -4.4249 -4.3759 27 1 2.4097 -3.0749 -2.9217 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260222670.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:39 Heat of formation + Delta-G solvation = 39.432701 kcal Electronic energy + Delta-G solvation = -14098.484828 eV Core-core repulsion = 11629.757033 eV Total energy + Delta-G solvation = -2468.727795 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.97645 -38.41072 -35.33230 -32.69831 -31.50722 -30.35702 -28.63358 -26.17003 -23.72298 -22.77808 -22.51792 -19.27253 -17.01946 -16.98099 -16.61954 -15.83367 -15.73103 -14.74800 -14.19395 -13.86134 -13.02202 -12.78757 -12.67557 -12.63795 -12.39906 -11.55640 -11.30089 -11.04272 -10.88366 -10.29222 -9.94764 -9.87960 -9.07515 -8.78518 -8.49565 -7.76576 -7.33659 -6.19759 -4.36346 1.27228 1.54586 2.86541 3.08244 3.14918 3.24595 3.30450 4.12439 4.26527 4.90290 4.93819 5.02753 5.17361 5.39661 5.41273 5.83957 5.90034 6.14912 6.44274 6.51211 6.69221 6.82331 6.92504 7.46029 7.63760 7.65599 7.96626 8.14333 8.55044 8.80275 8.97078 9.35965 10.78284 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.009229 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.693749 B = 3033.191663 C = 3438.297162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.269 3.731 10 H 0.051 0.949 11 N -0.851 5.851 12 C -0.104 4.104 13 C -0.019 4.019 14 O -0.194 6.194 15 C 0.245 3.755 16 N -0.482 5.482 17 C 0.128 3.872 18 C -0.206 4.206 19 C -0.013 4.013 20 C -0.160 4.160 21 H 0.266 0.734 22 H 0.311 0.689 23 H 0.360 0.640 24 H 0.211 0.789 25 H 0.163 0.837 26 H 0.137 0.863 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -5.838 -3.340 8.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.159 3.841 10 H 0.068 0.932 11 N -0.381 5.381 12 C -0.107 4.107 13 C -0.082 4.082 14 O -0.092 6.092 15 C 0.070 3.930 16 N -0.200 5.200 17 C -0.034 4.034 18 C -0.226 4.226 19 C -0.039 4.039 20 C -0.164 4.164 21 H 0.076 0.924 22 H 0.120 0.880 23 H 0.177 0.823 24 H 0.227 0.773 25 H 0.180 0.820 26 H 0.155 0.845 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.782 -7.281 -3.001 9.214 hybrid contribution 0.287 2.792 -0.220 2.816 sum 5.069 -4.489 -3.221 7.498 Atomic orbital electron populations 1.69741 1.05841 1.27297 1.50312 1.25013 0.94945 0.99356 0.94225 0.86450 0.80161 0.83121 0.77798 1.19739 1.20754 1.20815 1.21813 0.93722 0.90825 1.52013 0.92564 1.17402 0.88067 0.86733 0.91855 0.93158 1.59466 1.18421 1.56388 1.03825 1.21726 1.00104 0.99090 0.89732 1.23661 0.93483 0.90667 1.00428 1.83889 1.54012 1.51026 1.20318 1.19652 0.95504 0.93790 0.84087 1.66257 1.20625 1.29203 1.03936 1.22447 0.96997 0.95397 0.88550 1.21913 1.00548 0.99031 1.01155 1.21115 0.94946 0.96780 0.91053 1.20657 1.01116 0.99006 0.95615 0.92366 0.88045 0.82336 0.77282 0.82037 0.84480 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 11.54 55.43 0.64 -23.07 15 2 C 0.07 1.75 5.38 -17.82 -0.10 1.65 15 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 7 C -0.54 -14.19 8.71 -34.44 -0.30 -14.49 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.27 6.51 3.24 -70.02 -0.23 6.28 15 10 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 11 N -0.85 -19.22 8.90 -6.65 -0.06 -19.28 15 12 C -0.10 -2.27 5.44 -102.72 -0.56 -2.83 15 13 C -0.02 -0.37 11.23 29.24 0.33 -0.04 15 14 O -0.19 -3.91 10.57 3.92 0.04 -3.87 15 15 C 0.25 5.00 8.58 -16.37 -0.14 4.86 15 16 N -0.48 -8.89 10.38 -12.98 -0.13 -9.03 15 17 C 0.13 1.87 11.14 -17.50 -0.20 1.67 15 18 C -0.21 -2.94 10.10 -39.43 -0.40 -3.34 15 19 C -0.01 -0.23 10.22 -39.09 -0.40 -0.63 15 20 C -0.16 -3.31 6.40 -105.13 -0.67 -3.98 15 21 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 22 H 0.31 6.50 8.03 -39.29 -0.32 6.19 15 23 H 0.36 8.74 7.08 -39.29 -0.28 8.46 15 24 H 0.21 3.42 7.34 -52.49 -0.39 3.04 15 25 H 0.16 1.65 8.06 -52.49 -0.42 1.22 15 26 H 0.14 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.14 2.41 8.06 -52.49 -0.42 1.99 15 LS Contribution 243.51 15.07 3.67 3.67 Total: -1.00 -28.74 243.51 -5.73 -34.48 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -2.21 Total: 12.54 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.66 Total: -10.85 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.45 Total: -51.37 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.74 -5.73 -34.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222670.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.908 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds