Wall clock time and date at job start Mon Mar 30 2020 02:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00224 * 2 1 4 4 H 1.48502 * 109.47104 * 270.00374 * 3 2 1 5 5 H 1.48499 * 109.46980 * 30.00071 * 3 2 1 6 6 H 1.48495 * 109.47266 * 150.00331 * 3 2 1 7 7 C 1.37879 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47004 * 179.97438 * 9 7 2 11 11 C 1.35976 * 116.99732 * 179.97438 * 10 9 7 12 12 C 1.39189 * 119.92325 * 0.02562 * 11 10 9 13 13 C 1.37773 * 120.63998 * 180.02562 * 12 11 10 14 14 C 1.38929 * 120.03212 * 359.95914 * 13 12 11 15 15 O 1.34924 * 133.33658 * 180.02562 * 14 13 12 16 16 C 1.34430 * 110.88578 * 179.97438 * 15 14 13 17 17 C 1.33998 * 110.15413 * 0.02562 * 16 15 14 18 18 C 1.40451 * 119.41300 * 0.02562 * 14 13 12 19 19 C 1.38175 * 119.91989 * 179.97438 * 11 10 9 20 20 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46879 * 60.00136 * 9 7 2 22 22 H 1.08997 * 109.47142 * 300.00028 * 9 7 2 23 23 H 1.08001 * 119.68245 * 359.97438 * 12 11 10 24 24 H 1.07999 * 119.98626 * 179.97438 * 13 12 11 25 25 H 1.07999 * 124.92286 * 179.97438 * 16 15 14 26 26 H 1.08003 * 126.90164 * 179.97438 * 17 16 15 27 27 H 1.08000 * 120.21961 * 359.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 8 3.9878 -2.5415 -0.0010 11 6 5.3358 -2.7196 -0.0020 12 6 6.1822 -1.6147 -0.0026 13 6 7.5502 -1.7781 -0.0042 14 6 8.0979 -3.0548 -0.0043 15 8 9.3649 -3.5189 -0.0052 16 6 9.3829 -4.8631 -0.0044 17 6 8.1313 -5.3416 -0.0035 18 6 7.2455 -4.1711 -0.0035 19 6 5.8621 -3.9972 -0.0014 20 1 -0.4850 0.8400 0.0004 21 1 3.8751 -0.6806 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 5.7625 -0.6195 -0.0026 24 1 8.1971 -0.9133 -0.0050 25 1 10.2766 -5.4694 -0.0053 26 1 7.8340 -6.3799 -0.0032 27 1 5.2063 -4.8553 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260231915.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:46 Heat of formation + Delta-G solvation = -9.457843 kcal Electronic energy + Delta-G solvation = -13622.116934 eV Core-core repulsion = 11118.976335 eV Total energy + Delta-G solvation = -2503.140599 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.20695 -39.01205 -36.02875 -32.84578 -32.62648 -29.96536 -28.88517 -27.94523 -23.33068 -22.80523 -21.17823 -21.04038 -17.73832 -17.34467 -16.98245 -15.94382 -15.93939 -15.07267 -14.80441 -14.09086 -13.93500 -13.00650 -12.90432 -12.71139 -12.50438 -12.04820 -11.99386 -11.12790 -11.05658 -10.63888 -10.17405 -10.08805 -9.98190 -9.38096 -8.77480 -8.16181 -7.53711 -6.26135 -4.28374 1.04985 1.71616 2.47251 2.93297 3.15556 3.21746 3.23251 3.96426 4.02132 4.22097 4.72928 4.83365 5.04297 5.10828 5.31740 5.45889 5.56869 5.68324 6.00144 6.17792 6.29088 6.40997 6.54331 6.60196 6.68849 6.75199 7.27696 7.35488 7.95535 8.48261 8.83484 9.29495 10.86214 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.065780 B = 0.006326 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.559277 B = 4425.103213 C = 4835.519261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.087 0.913 9 C 0.166 3.834 10 O -0.300 6.300 11 C 0.137 3.863 12 C -0.177 4.177 13 C -0.069 4.069 14 C 0.000 4.000 15 O -0.200 6.200 16 C 0.004 3.996 17 C -0.215 4.215 18 C -0.093 4.093 19 C -0.129 4.129 20 H 0.270 0.730 21 H 0.020 0.980 22 H 0.015 0.985 23 H 0.142 0.858 24 H 0.130 0.870 25 H 0.204 0.796 26 H 0.155 0.845 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.127 -5.673 0.006 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.105 0.895 9 C 0.093 3.907 10 O -0.213 6.213 11 C 0.090 3.910 12 C -0.196 4.196 13 C -0.087 4.087 14 C -0.046 4.046 15 O -0.102 6.102 16 C -0.061 4.061 17 C -0.235 4.235 18 C -0.094 4.094 19 C -0.148 4.148 20 H 0.080 0.920 21 H 0.037 0.963 22 H 0.033 0.967 23 H 0.160 0.840 24 H 0.148 0.852 25 H 0.220 0.780 26 H 0.173 0.827 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.985 -5.492 0.008 17.851 hybrid contribution 0.327 0.935 -0.013 0.990 sum 17.312 -4.557 -0.005 17.902 Atomic orbital electron populations 1.69850 1.06046 1.27446 1.49121 1.24708 0.94850 0.98727 0.94252 0.86883 0.80432 0.83667 0.79054 1.19591 1.20411 1.18908 1.20770 0.87410 0.95821 1.52727 0.89528 1.21033 0.96661 0.77186 0.95841 1.86195 1.15668 1.32940 1.86475 1.18991 0.84790 0.93005 0.94260 1.21245 0.92424 0.99585 1.06326 1.19626 0.94061 0.92847 1.02189 1.19434 0.81479 0.95085 1.08599 1.83963 1.27739 1.21523 1.77016 1.23861 0.99368 0.80797 1.02063 1.22455 0.91844 0.98760 1.10411 1.19597 0.93449 0.92708 1.03688 1.19601 0.92328 0.95616 1.07287 0.92015 0.96268 0.96722 0.84049 0.85184 0.77958 0.82710 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.96 55.43 0.77 -25.80 15 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 15 3 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 15 7 C -0.53 -15.25 9.99 -34.44 -0.34 -15.60 15 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 15 9 C 0.17 4.07 3.56 36.01 0.13 4.20 15 10 O -0.30 -7.04 10.12 -19.66 -0.20 -7.24 15 11 C 0.14 2.72 6.68 -39.25 -0.26 2.45 15 12 C -0.18 -3.13 9.01 -39.40 -0.36 -3.48 15 13 C -0.07 -1.07 10.05 -39.50 -0.40 -1.46 15 14 C 0.00 0.00 7.41 -38.49 -0.29 -0.28 15 15 O -0.20 -2.81 10.59 3.63 0.04 -2.78 15 16 C 0.00 0.05 11.96 29.24 0.35 0.40 15 17 C -0.22 -2.67 11.14 -37.62 -0.42 -3.08 15 18 C -0.09 -1.50 6.39 -105.17 -0.67 -2.17 15 19 C -0.13 -2.29 10.03 -39.16 -0.39 -2.68 15 20 H 0.27 7.45 8.31 -40.82 -0.34 7.12 15 21 H 0.02 0.46 6.71 -51.93 -0.35 0.11 15 22 H 0.02 0.35 7.08 -51.93 -0.37 -0.02 15 23 H 0.14 2.43 6.26 -52.49 -0.33 2.10 15 24 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.20 1.18 8.06 -52.49 -0.42 0.75 15 26 H 0.16 1.49 8.06 -52.48 -0.42 1.06 15 27 H 0.13 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 243.23 15.07 3.67 3.67 Total: -1.00 -31.37 243.23 -5.46 -36.84 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -2.33 Total: -0.84 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.75 Total: -19.60 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.77 Total: -25.80 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.16 Total: -10.01 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.37 -5.46 -36.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231915.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.378 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds