Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00441 * 2 1 4 4 H 1.48499 * 109.47257 * 240.00076 * 3 2 1 5 5 H 1.48502 * 109.46588 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47070 * 119.99215 * 3 2 1 7 7 C 1.37881 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99688 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46869 * 299.99375 * 9 7 2 11 11 N 1.46895 * 109.47428 * 59.99627 * 9 7 2 12 12 C 1.50706 * 109.46931 * 179.97438 * 9 7 2 13 13 C 1.34087 * 126.86466 * 265.02040 * 12 9 7 14 14 O 1.34374 * 110.14689 * 179.97438 * 13 12 9 15 15 C 1.34697 * 110.81137 * 0.02562 * 14 13 12 16 16 C 1.39044 * 133.68730 * 179.97438 * 15 14 13 17 17 C 1.38386 * 118.32618 * 180.02562 * 16 15 14 18 18 C 1.38607 * 119.68843 * 359.97438 * 17 16 15 19 19 N 1.31618 * 121.16574 * 0.02562 * 18 17 16 20 20 C 1.32783 * 121.35628 * 359.97438 * 19 18 17 21 21 H 0.97007 * 119.99837 * 0.02562 * 1 2 3 22 22 H 1.00898 * 110.99891 * 296.04496 * 11 9 7 23 23 H 1.00900 * 111.00253 * 60.00104 * 11 9 7 24 24 H 1.08001 * 124.92914 * 0.23077 * 13 12 9 25 25 H 1.08005 * 120.83843 * 0.02562 * 16 15 14 26 26 H 1.07999 * 120.15491 * 180.02562 * 17 16 15 27 27 H 1.08007 * 119.41485 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4068 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0005 13 6 2.6822 -4.3166 -1.0682 14 8 3.5444 -5.2726 -0.6832 15 6 3.6954 -5.2700 0.6553 16 6 4.4501 -6.0345 1.5382 17 6 4.3634 -5.7529 2.8903 18 6 3.5377 -4.7287 3.3266 19 7 2.8302 -4.0150 2.4766 20 6 2.8801 -4.2474 1.1702 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3005 -1.8577 -1.1909 23 1 0.9650 -2.5260 -2.0381 24 1 2.3980 -4.1156 -2.0906 25 1 5.0879 -6.8280 1.1778 26 1 4.9370 -6.3279 3.6021 27 1 3.4730 -4.5129 4.3830 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260250446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = 36.860539 kcal Electronic energy + Delta-G solvation = -14082.841702 eV Core-core repulsion = 11614.002370 eV Total energy + Delta-G solvation = -2468.839332 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.03720 -38.38481 -35.20011 -32.51315 -31.50530 -30.32382 -28.80569 -26.04609 -23.74457 -22.68323 -22.54749 -19.20119 -17.39637 -16.81017 -16.51022 -15.74956 -15.62413 -14.65914 -14.13809 -13.74757 -13.19592 -12.89892 -12.85718 -12.55105 -12.46687 -11.58931 -11.20215 -10.93829 -10.76703 -10.23811 -9.82835 -9.80888 -8.92277 -8.66569 -8.44906 -7.83495 -7.24300 -6.07573 -4.22271 1.20779 1.54568 2.98901 3.20412 3.26184 3.30807 3.35270 4.20550 4.37118 4.55261 4.88572 5.06498 5.16164 5.26456 5.47807 5.67592 6.01941 6.10647 6.22480 6.35286 6.69317 6.85144 6.93347 7.54051 7.72906 7.76492 8.08172 8.38228 8.66462 8.90447 9.06687 9.47881 10.91401 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035032 B = 0.009113 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.068262 B = 3071.662755 C = 3428.752075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.272 3.728 10 H 0.056 0.944 11 N -0.851 5.851 12 C -0.099 4.099 13 C -0.012 4.012 14 O -0.198 6.198 15 C -0.007 4.007 16 C -0.069 4.069 17 C -0.164 4.164 18 C 0.085 3.915 19 N -0.430 5.430 20 C 0.092 3.908 21 H 0.266 0.734 22 H 0.360 0.640 23 H 0.309 0.691 24 H 0.210 0.790 25 H 0.136 0.864 26 H 0.140 0.860 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 -9.271 1.635 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.071 0.929 9 C 0.162 3.838 10 H 0.073 0.927 11 N -0.381 5.381 12 C -0.102 4.102 13 C -0.077 4.077 14 O -0.099 6.099 15 C -0.058 4.058 16 C -0.096 4.096 17 C -0.184 4.184 18 C -0.080 4.080 19 N -0.138 5.138 20 C -0.040 4.040 21 H 0.076 0.924 22 H 0.177 0.823 23 H 0.117 0.883 24 H 0.227 0.773 25 H 0.154 0.846 26 H 0.158 0.842 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.015 -9.351 2.009 11.298 hybrid contribution 1.404 1.393 -0.363 2.011 sum 7.418 -7.958 1.646 11.003 Atomic orbital electron populations 1.69721 1.05806 1.27322 1.50506 1.24986 0.94948 0.99235 0.94360 0.86554 0.79563 0.82575 0.78715 1.20266 1.21125 1.20165 1.21690 0.93475 0.90884 1.51709 0.92914 1.17376 0.88123 0.86450 0.91822 0.92659 1.59512 1.18430 1.56391 1.03767 1.21680 1.00846 0.99498 0.88184 1.23676 0.93577 0.90239 1.00206 1.83924 1.55702 1.50245 1.20008 1.20477 1.01528 1.00247 0.83502 1.20262 0.98874 0.99280 0.91177 1.21840 1.01581 1.00249 0.94707 1.22723 0.93487 0.92355 0.99391 1.67085 1.19644 1.25305 1.01797 1.20858 0.97017 0.94647 0.91446 0.92380 0.82331 0.88285 0.77337 0.84635 0.84178 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 11.54 55.43 0.64 -24.31 15 2 C 0.07 1.84 5.38 -17.82 -0.10 1.74 15 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.54 -14.91 8.71 -34.44 -0.30 -15.21 15 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.27 7.03 3.24 -70.02 -0.23 6.80 15 10 H 0.06 1.63 8.14 -51.93 -0.42 1.20 15 11 N -0.85 -20.05 8.96 -6.65 -0.06 -20.11 15 12 C -0.10 -2.28 5.41 -102.64 -0.55 -2.84 15 13 C -0.01 -0.23 11.27 29.27 0.33 0.10 15 14 O -0.20 -3.70 10.58 4.43 0.05 -3.65 15 15 C -0.01 -0.14 7.43 -38.41 -0.29 -0.42 15 16 C -0.07 -1.02 10.19 -39.23 -0.40 -1.42 15 17 C -0.16 -2.16 10.09 -39.39 -0.40 -2.56 15 18 C 0.08 1.35 11.17 -17.51 -0.20 1.16 15 19 N -0.43 -9.15 10.41 -9.86 -0.10 -9.25 15 20 C 0.09 2.03 7.53 -83.14 -0.63 1.40 15 21 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.36 9.10 7.08 -39.29 -0.28 8.82 15 23 H 0.31 6.63 7.99 -39.29 -0.31 6.32 15 24 H 0.21 3.37 7.34 -52.49 -0.39 2.99 15 25 H 0.14 1.51 8.06 -52.48 -0.42 1.09 15 26 H 0.14 1.24 8.06 -52.49 -0.42 0.82 15 27 H 0.16 1.92 8.06 -52.48 -0.42 1.50 15 LS Contribution 243.51 15.07 3.67 3.67 Total: -1.00 -30.77 243.51 -5.79 -36.56 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -2.21 Total: 11.95 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.75 Total: -11.24 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.48 Total: -53.67 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: 0.05 Total: -3.65 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.77 -5.79 -36.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.421 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds