Wall clock time and date at job start Mon Mar 30 2020 02:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00441 * 2 1 4 4 H 1.48499 * 109.47257 * 240.00076 * 3 2 1 5 5 H 1.48502 * 109.46588 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47070 * 119.99215 * 3 2 1 7 7 C 1.37881 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99688 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46869 * 299.99375 * 9 7 2 11 11 N 1.46895 * 109.47428 * 59.99627 * 9 7 2 12 12 C 1.50706 * 109.46931 * 179.97438 * 9 7 2 13 13 C 1.34087 * 126.86466 * 265.02040 * 12 9 7 14 14 O 1.34374 * 110.14689 * 179.97438 * 13 12 9 15 15 C 1.34697 * 110.81137 * 0.02562 * 14 13 12 16 16 C 1.39044 * 133.68730 * 179.97438 * 15 14 13 17 17 C 1.38386 * 118.32618 * 180.02562 * 16 15 14 18 18 C 1.38607 * 119.68843 * 359.97438 * 17 16 15 19 19 N 1.31618 * 121.16574 * 0.02562 * 18 17 16 20 20 C 1.32783 * 121.35628 * 359.97438 * 19 18 17 21 21 H 0.97007 * 119.99837 * 0.02562 * 1 2 3 22 22 H 1.00898 * 110.99891 * 296.04496 * 11 9 7 23 23 H 1.00900 * 111.00253 * 60.00104 * 11 9 7 24 24 H 1.08001 * 124.92914 * 0.23077 * 13 12 9 25 25 H 1.08005 * 120.83843 * 0.02562 * 16 15 14 26 26 H 1.07999 * 120.15491 * 180.02562 * 17 16 15 27 27 H 1.08007 * 119.41485 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4068 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0005 13 6 2.6822 -4.3166 -1.0682 14 8 3.5444 -5.2726 -0.6832 15 6 3.6954 -5.2700 0.6553 16 6 4.4501 -6.0345 1.5382 17 6 4.3634 -5.7529 2.8903 18 6 3.5377 -4.7287 3.3266 19 7 2.8302 -4.0150 2.4766 20 6 2.8801 -4.2474 1.1702 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3005 -1.8577 -1.1909 23 1 0.9650 -2.5260 -2.0381 24 1 2.3980 -4.1156 -2.0906 25 1 5.0879 -6.8280 1.1778 26 1 4.9370 -6.3279 3.6021 27 1 3.4730 -4.5129 4.3830 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260250446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:52 Heat of formation + Delta-G solvation = 13.726860 kcal Electronic energy + Delta-G solvation = -14083.844854 eV Core-core repulsion = 11614.002370 eV Total energy + Delta-G solvation = -2469.842484 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.46104 -39.70903 -37.10291 -34.16625 -33.14035 -31.87212 -30.28859 -28.09782 -25.14247 -24.50526 -23.86612 -20.78267 -18.81663 -18.65963 -18.14341 -17.14153 -17.11241 -16.48560 -15.81766 -15.31410 -14.82118 -14.43680 -14.30957 -14.24642 -13.62969 -13.36848 -13.05381 -12.81781 -12.73218 -12.10029 -11.82515 -11.25521 -10.73877 -10.25684 -9.87604 -9.39786 -9.19366 -8.14857 -6.39950 -0.06725 0.25095 1.34045 1.36641 1.43278 1.51139 1.82319 2.35645 2.87184 3.01457 3.24165 3.57387 3.95932 4.05485 4.20839 4.44158 4.55427 4.61711 4.87105 5.01637 5.06572 5.30252 5.55826 5.60807 5.68934 5.98734 6.13991 6.60755 6.85347 7.06841 7.09077 7.35560 8.80527 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035032 B = 0.009113 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.068262 B = 3071.662755 C = 3428.752075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.555 4.555 8 H 0.038 0.962 9 C 0.284 3.716 10 H 0.001 0.999 11 N -0.839 5.839 12 C -0.154 4.154 13 C 0.012 3.988 14 O -0.191 6.191 15 C -0.025 4.025 16 C -0.060 4.060 17 C -0.139 4.139 18 C 0.081 3.919 19 N -0.491 5.491 20 C 0.047 3.953 21 H 0.269 0.731 22 H 0.349 0.651 23 H 0.322 0.678 24 H 0.237 0.763 25 H 0.180 0.820 26 H 0.199 0.801 27 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -10.611 2.001 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.595 4.595 8 H 0.056 0.944 9 C 0.174 3.826 10 H 0.019 0.981 11 N -0.368 5.368 12 C -0.157 4.157 13 C -0.053 4.053 14 O -0.091 6.091 15 C -0.075 4.075 16 C -0.086 4.086 17 C -0.158 4.158 18 C -0.083 4.083 19 N -0.200 5.200 20 C -0.083 4.083 21 H 0.079 0.921 22 H 0.164 0.836 23 H 0.132 0.868 24 H 0.253 0.747 25 H 0.198 0.802 26 H 0.216 0.784 27 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 8.206 -10.712 2.355 13.698 hybrid contribution 0.773 1.702 -0.327 1.897 sum 8.979 -9.010 2.028 12.881 Atomic orbital electron populations 1.69825 1.06870 1.28170 1.50579 1.25730 0.95813 1.02286 0.93856 0.85582 0.78438 0.78791 0.78615 1.19213 1.20087 1.20713 1.21871 0.92853 0.92442 1.52333 0.94387 1.16933 0.87860 0.87518 0.90289 0.98079 1.59431 1.18026 1.55583 1.03801 1.21543 1.02725 1.00641 0.90757 1.24011 0.92047 0.88872 1.00394 1.83920 1.55210 1.49635 1.20354 1.20938 1.02366 1.00701 0.83462 1.20945 0.97698 0.98988 0.91003 1.22456 0.99683 0.98568 0.95116 1.23489 0.92479 0.92125 1.00234 1.67014 1.22510 1.28163 1.02352 1.20961 0.98911 0.96552 0.91865 0.92137 0.83579 0.86829 0.74686 0.80236 0.78434 0.79436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.42 11.54 21.45 0.25 -52.17 15 2 C 0.02 1.31 5.38 84.66 0.46 1.77 15 3 Si 0.96 44.49 29.54 68.60 2.03 46.51 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 7 C -0.56 -32.03 8.71 25.60 0.22 -31.81 15 8 H 0.04 2.24 7.74 -2.91 -0.02 2.22 15 9 C 0.28 15.50 3.24 43.42 0.14 15.64 15 10 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 11 N -0.84 -41.00 8.96 -174.96 -1.57 -42.56 15 12 C -0.15 -7.35 5.41 -18.58 -0.10 -7.45 15 13 C 0.01 0.48 11.27 66.87 0.75 1.24 15 14 O -0.19 -6.93 10.58 -7.07 -0.07 -7.00 15 15 C -0.02 -0.91 7.43 23.03 0.17 -0.74 15 16 C -0.06 -1.52 10.19 22.50 0.23 -1.30 15 17 C -0.14 -3.03 10.09 22.39 0.23 -2.80 15 18 C 0.08 2.42 11.17 84.81 0.95 3.37 15 19 N -0.49 -21.34 10.41 -185.10 -1.93 -23.26 15 20 C 0.05 2.13 7.53 41.79 0.31 2.45 15 21 H 0.27 14.58 8.31 -92.70 -0.77 13.81 15 22 H 0.35 18.34 7.08 -89.70 -0.63 17.70 15 23 H 0.32 14.08 7.99 -89.69 -0.72 13.36 15 24 H 0.24 7.42 7.34 -2.91 -0.02 7.40 15 25 H 0.18 2.95 8.06 -2.91 -0.02 2.92 15 26 H 0.20 2.05 8.06 -2.91 -0.02 2.03 15 27 H 0.19 4.10 8.06 -2.91 -0.02 4.08 15 Total: -1.00 -71.66 243.51 1.93 -69.73 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.13 Total: 28.40 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.36 Total: -19.64 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -3.25 Total: -118.00 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.07 Total: -7.00 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.66 1.93 -69.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.455 kcal (2) G-P(sol) polarization free energy of solvation -71.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds