Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31058 * 1 3 3 Si 1.86796 * 120.00313 * 2 1 4 4 H 1.48504 * 109.46880 * 179.72470 * 3 2 1 5 5 H 1.48498 * 109.47241 * 299.72779 * 3 2 1 6 6 H 1.48501 * 109.47173 * 59.72697 * 3 2 1 7 7 C 1.39695 * 119.99403 * 179.72677 * 2 1 3 8 8 H 1.08000 * 119.99311 * 179.97438 * 7 2 1 9 9 C 1.41068 * 120.00073 * 0.02562 * 7 2 1 10 10 N 1.33661 * 122.89366 * 359.70159 * 9 7 2 11 11 C 1.28785 * 116.07731 * 179.79824 * 10 9 7 12 12 C 1.50703 * 124.96749 * 180.22387 * 11 10 9 13 13 N 1.46901 * 109.47145 * 90.29244 * 12 11 10 14 14 S 1.75881 * 110.06255 * 0.45698 * 11 10 9 15 15 C 1.37935 * 122.89190 * 180.02562 * 9 7 2 16 16 Cl 1.73603 * 125.59005 * 359.97079 * 15 9 7 17 17 H 0.97000 * 119.99365 * 0.27004 * 1 2 3 18 18 H 1.09002 * 109.47099 * 210.29131 * 12 11 10 19 19 H 1.08994 * 109.47316 * 330.28658 * 12 11 10 20 20 H 1.00897 * 111.00092 * 180.02562 * 13 12 11 21 21 H 1.00899 * 110.99414 * 303.94657 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2447 1.6176 0.0000 4 1 3.7046 1.3462 0.0067 5 1 1.8910 2.3935 -1.2158 6 1 1.8810 2.3993 1.2092 7 6 2.0089 -1.2099 0.0058 8 1 3.0889 -1.2098 0.0054 9 6 1.3035 -2.4315 0.0110 10 7 -0.0314 -2.4988 0.0167 11 6 -0.5385 -3.6826 0.0170 12 6 -2.0139 -3.9902 0.0180 13 7 -2.4928 -4.0970 -1.3666 14 16 0.7425 -4.8877 0.0228 15 6 1.9319 -3.6593 0.0174 16 17 3.6489 -3.9155 0.0192 17 1 -0.4849 0.8401 -0.0040 18 1 -2.1880 -4.9331 0.5365 19 1 -2.5514 -3.1907 0.5278 20 1 -3.4802 -4.3026 -1.3928 21 1 -2.2845 -3.2580 -1.8869 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310567.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = 24.052632 kcal Electronic energy + Delta-G solvation = -10514.036429 eV Core-core repulsion = 8349.128631 eV Total energy + Delta-G solvation = -2164.907798 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.998 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.99374 -35.18779 -34.32546 -33.04388 -29.14573 -25.88890 -25.15200 -21.39022 -18.80756 -17.86533 -15.84952 -15.46831 -14.96682 -14.30282 -13.98805 -13.12144 -12.68934 -12.11221 -11.86726 -11.60655 -11.30857 -10.98084 -10.59169 -10.44670 -10.32830 -9.40770 -9.21467 -8.48812 -8.10061 -7.81332 -7.38981 -6.68864 -4.46124 2.08088 2.55157 2.98315 3.04909 3.11232 3.39581 3.90489 4.08545 4.11482 4.99350 5.29188 5.37976 5.77954 6.00561 6.73299 7.05164 7.21394 7.37836 7.73601 8.13103 8.35672 8.73777 9.39709 10.17536 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.013978 C = 0.009259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.823034 B = 2002.647049 C = 3023.392047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.408 4.408 8 H 0.093 0.907 9 C 0.233 3.767 10 N -0.392 5.392 11 C 0.064 3.936 12 C 0.149 3.851 13 N -0.843 5.843 14 S 0.018 5.982 15 C -0.381 4.381 16 Cl -0.065 7.065 17 H 0.275 0.725 18 H 0.081 0.919 19 H 0.052 0.948 20 H 0.339 0.661 21 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 -2.664 -0.021 4.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.154 4.154 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.442 4.442 8 H 0.111 0.889 9 C 0.110 3.890 10 N -0.107 5.107 11 C -0.221 4.221 12 C 0.015 3.985 13 N -0.374 5.374 14 S 0.264 5.736 15 C -0.528 4.528 16 Cl -0.038 7.038 17 H 0.086 0.914 18 H 0.099 0.901 19 H 0.070 0.930 20 H 0.151 0.849 21 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.867 -3.718 -0.054 4.696 hybrid contribution 0.527 2.365 0.224 2.433 sum -2.340 -1.354 0.170 2.708 Atomic orbital electron populations 1.70132 1.07130 1.28241 1.31042 1.26072 0.95027 1.01415 0.92912 0.86147 0.80950 0.80538 0.78553 1.18189 1.19749 1.19766 1.19166 0.94713 0.88057 1.42231 0.88941 1.17882 0.85440 0.92311 0.93381 1.67577 1.11280 1.19808 1.12082 1.27478 0.98443 0.90833 1.05313 1.20070 0.87669 1.00424 0.90322 1.58704 1.21109 1.44509 1.13113 1.82665 0.99628 1.13273 1.77993 1.24450 0.86939 0.95798 1.45565 1.98138 1.10956 1.96271 1.98408 0.91430 0.90056 0.93014 0.84906 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.29 11.69 55.54 0.65 -18.64 14 2 C 0.07 1.76 5.49 -17.34 -0.10 1.66 14 3 Si 0.91 18.84 29.56 -169.99 -5.02 13.81 14 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 14 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 7 C -0.41 -11.10 9.02 -37.97 -0.34 -11.44 14 8 H 0.09 2.46 7.31 -52.49 -0.38 2.08 14 9 C 0.23 6.40 6.47 -86.11 -0.56 5.85 14 10 N -0.39 -10.26 8.46 -8.32 -0.07 -10.33 14 11 C 0.06 1.44 7.08 -13.55 -0.10 1.34 14 12 C 0.15 2.59 7.39 -4.97 -0.04 2.55 14 13 N -0.84 -13.06 9.61 -11.41 -0.11 -13.17 14 14 S 0.02 0.40 23.16 -107.50 -2.49 -2.08 14 15 C -0.38 -9.75 7.03 30.62 0.22 -9.53 14 16 Cl -0.07 -1.50 28.49 -51.86 -1.48 -2.98 14 17 H 0.28 6.45 8.30 -40.82 -0.34 6.11 14 18 H 0.08 1.23 8.14 -51.93 -0.42 0.81 14 19 H 0.05 0.89 8.14 -51.93 -0.42 0.46 14 20 H 0.34 4.00 9.08 -39.29 -0.36 3.64 14 21 H 0.35 5.80 8.98 -39.29 -0.35 5.45 14 LS Contribution 224.73 15.07 3.39 3.39 Total: -1.00 -29.00 224.73 -7.12 -36.12 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -1.07 Total: 3.47 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.91 Total: -9.58 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.47 Total: -42.15 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.49 Total: -2.08 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.48 Total: -2.98 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.00 -7.12 -36.12 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310567.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.171 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds