Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31058 * 1 3 3 Si 1.86796 * 120.00313 * 2 1 4 4 H 1.48504 * 109.46880 * 179.72470 * 3 2 1 5 5 H 1.48498 * 109.47241 * 299.72779 * 3 2 1 6 6 H 1.48501 * 109.47173 * 59.72697 * 3 2 1 7 7 C 1.39695 * 119.99403 * 179.72677 * 2 1 3 8 8 H 1.08000 * 119.99311 * 179.97438 * 7 2 1 9 9 C 1.41068 * 120.00073 * 0.02562 * 7 2 1 10 10 N 1.33661 * 122.89366 * 359.70159 * 9 7 2 11 11 C 1.28785 * 116.07731 * 179.79824 * 10 9 7 12 12 C 1.50703 * 124.96749 * 180.22387 * 11 10 9 13 13 N 1.46901 * 109.47145 * 90.29244 * 12 11 10 14 14 S 1.75881 * 110.06255 * 0.45698 * 11 10 9 15 15 C 1.37935 * 122.89190 * 180.02562 * 9 7 2 16 16 Cl 1.73603 * 125.59005 * 359.97079 * 15 9 7 17 17 H 0.97000 * 119.99365 * 0.27004 * 1 2 3 18 18 H 1.09002 * 109.47099 * 210.29131 * 12 11 10 19 19 H 1.08994 * 109.47316 * 330.28658 * 12 11 10 20 20 H 1.00897 * 111.00092 * 180.02562 * 13 12 11 21 21 H 1.00899 * 110.99414 * 303.94657 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2447 1.6176 0.0000 4 1 3.7046 1.3462 0.0067 5 1 1.8910 2.3935 -1.2158 6 1 1.8810 2.3993 1.2092 7 6 2.0089 -1.2099 0.0058 8 1 3.0889 -1.2098 0.0054 9 6 1.3035 -2.4315 0.0110 10 7 -0.0314 -2.4988 0.0167 11 6 -0.5385 -3.6826 0.0170 12 6 -2.0139 -3.9902 0.0180 13 7 -2.4928 -4.0970 -1.3666 14 16 0.7425 -4.8877 0.0228 15 6 1.9319 -3.6593 0.0174 16 17 3.6489 -3.9155 0.0192 17 1 -0.4849 0.8401 -0.0040 18 1 -2.1880 -4.9331 0.5365 19 1 -2.5514 -3.1907 0.5278 20 1 -3.4802 -4.3026 -1.3928 21 1 -2.2845 -3.2580 -1.8869 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310567.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = 3.113153 kcal Electronic energy + Delta-G solvation = -10514.944433 eV Core-core repulsion = 8349.128631 eV Total energy + Delta-G solvation = -2165.815802 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.998 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.84681 -37.02532 -35.88683 -34.79685 -30.96461 -27.69796 -26.83836 -23.13347 -20.61363 -19.72845 -17.50481 -17.24104 -16.58303 -15.74560 -15.69283 -14.83710 -14.46610 -13.81395 -13.45702 -13.29734 -12.95232 -12.74193 -12.43136 -12.34934 -12.01341 -11.23014 -11.08028 -10.05631 -9.72525 -9.57638 -9.27901 -8.55192 -6.43337 0.25243 0.76012 1.36563 1.37050 1.49704 1.55631 2.16833 2.23005 2.26289 3.35706 3.56443 3.89368 4.43550 4.61952 4.97771 5.15656 5.31831 6.05888 6.16010 6.40940 6.62613 6.79482 7.52697 8.33235 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.013978 C = 0.009259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.823034 B = 2002.647049 C = 3023.392047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.029 3.971 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.205 3.795 10 N -0.430 5.430 11 C 0.070 3.930 12 C 0.152 3.848 13 N -0.842 5.842 14 S 0.055 5.945 15 C -0.412 4.412 16 Cl -0.054 7.054 17 H 0.284 0.716 18 H 0.110 0.890 19 H 0.055 0.945 20 H 0.362 0.638 21 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -2.641 -0.052 4.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.478 4.478 8 H 0.104 0.896 9 C 0.082 3.918 10 N -0.146 5.146 11 C -0.215 4.215 12 C 0.018 3.982 13 N -0.375 5.375 14 S 0.302 5.698 15 C -0.558 4.558 16 Cl -0.027 7.027 17 H 0.094 0.906 18 H 0.128 0.872 19 H 0.073 0.927 20 H 0.177 0.823 21 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.532 -3.734 -0.086 5.140 hybrid contribution 0.675 2.232 0.228 2.343 sum -2.856 -1.502 0.141 3.230 Atomic orbital electron populations 1.70179 1.08402 1.29657 1.31051 1.26895 0.95891 1.04383 0.91995 0.85067 0.79179 0.75890 0.79098 1.18396 1.18676 1.18726 1.19393 0.94686 0.89403 1.44287 0.89646 1.18287 0.86526 0.93182 0.93846 1.67577 1.10906 1.21577 1.14513 1.28418 1.00651 0.90086 1.02313 1.20222 0.84441 1.01909 0.91667 1.58650 1.23065 1.44015 1.11743 1.82362 0.98240 1.11799 1.77365 1.24868 0.88396 0.96843 1.45704 1.98122 1.09948 1.96192 1.98405 0.90575 0.87241 0.92665 0.82260 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -40.06 11.69 21.79 0.25 -39.81 14 2 C 0.03 1.48 5.49 85.16 0.47 1.95 14 3 Si 0.99 38.48 29.56 68.60 2.03 40.51 14 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 14 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 14 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 14 7 C -0.44 -24.56 9.02 23.32 0.21 -24.35 14 8 H 0.09 4.65 7.31 -2.91 -0.02 4.63 14 9 C 0.20 11.39 6.47 39.49 0.26 11.64 14 10 N -0.43 -22.55 8.46 -180.24 -1.52 -24.07 14 11 C 0.07 3.07 7.08 88.56 0.63 3.69 14 12 C 0.15 4.92 7.39 85.56 0.63 5.55 14 13 N -0.84 -24.14 9.61 -190.00 -1.83 -25.96 14 14 S 0.06 2.41 23.16 -56.49 -1.31 1.10 14 15 C -0.41 -21.09 7.03 67.75 0.48 -20.62 14 16 Cl -0.05 -2.49 28.49 -2.72 -0.08 -2.57 14 17 H 0.28 13.23 8.30 -92.71 -0.77 12.46 14 18 H 0.11 2.94 8.14 -2.39 -0.02 2.92 14 19 H 0.06 1.78 8.14 -2.39 -0.02 1.76 14 20 H 0.36 7.50 9.08 -89.70 -0.81 6.69 14 21 H 0.34 10.87 8.98 -89.69 -0.81 10.07 14 Total: -1.00 -61.71 224.73 -0.11 -61.83 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -0.33 Total: 11.10 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 2.67 Total: -22.13 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -3.10 Total: -89.84 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -0.08 Total: -2.57 kcal Total: -61.71 -0.11 -61.83 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310567.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.940 kcal (2) G-P(sol) polarization free energy of solvation -61.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds