Wall clock time and date at job start Mon Mar 30 2020 02:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47452 * 2 1 4 4 C 1.50703 * 109.46776 * 240.00027 * 2 1 3 5 5 H 1.08002 * 119.99679 * 245.62458 * 4 2 1 6 6 C 1.37877 * 120.00472 * 65.63102 * 4 2 1 7 7 N 1.31512 * 119.99989 * 197.54412 * 6 4 2 8 8 Si 1.86800 * 119.99662 * 17.53995 * 6 4 2 9 9 H 1.48498 * 109.47299 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47393 * 60.00063 * 8 6 4 11 11 H 1.48502 * 109.47061 * 300.00208 * 8 6 4 12 12 C 1.50700 * 109.47024 * 120.00621 * 2 1 3 13 13 N 1.31737 * 123.78825 * 60.01617 * 12 2 1 14 14 N 1.27569 * 118.28478 * 179.97438 * 13 12 2 15 15 S 1.56511 * 109.25244 * 359.97438 * 14 13 12 16 16 C 1.35493 * 123.78051 * 239.72604 * 12 2 1 17 17 Cl 1.73606 * 127.93258 * 0.02712 * 16 12 2 18 18 H 1.08997 * 109.47226 * 306.25818 * 1 2 3 19 19 H 1.09001 * 109.47395 * 66.25558 * 1 2 3 20 20 H 1.09004 * 109.47694 * 186.25759 * 1 2 3 21 21 H 0.96992 * 120.00367 * 354.85568 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5761 -1.6385 -1.1340 6 6 1.7975 -0.1757 -2.4795 7 7 1.9154 -0.9298 -3.5504 8 14 1.3120 1.6200 -2.6503 9 1 1.1176 1.9458 -4.0860 10 1 2.3853 2.4787 -2.0883 11 1 0.0464 1.8630 -1.9123 12 6 2.0323 -0.7105 1.2304 13 7 1.7606 -1.9684 1.5122 14 7 2.2419 -2.4653 2.5841 15 16 3.0831 -1.3741 3.3264 16 6 2.8186 -0.1289 2.1680 17 17 3.4200 1.4995 2.1956 18 1 -0.3633 0.6078 0.8286 19 1 -0.3634 0.4138 -0.9407 20 1 -0.3635 -1.0215 0.1120 21 1 2.2392 -1.8404 -3.4691 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520138.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:35 Heat of formation + Delta-G solvation = 35.707908 kcal Electronic energy + Delta-G solvation = -10692.037724 eV Core-core repulsion = 8527.635337 eV Total energy + Delta-G solvation = -2164.402387 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.998 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.05773 -38.08480 -36.56016 -33.92006 -31.39703 -27.87980 -26.82472 -24.04984 -21.95688 -20.01689 -18.79707 -17.53229 -16.93862 -16.13924 -15.31803 -14.76096 -14.22041 -13.96549 -13.71217 -13.57713 -13.19927 -12.86430 -12.33678 -12.05030 -11.78533 -11.52982 -11.17348 -11.08193 -10.65436 -10.47605 -10.33877 -8.75643 -6.37557 -0.98935 -0.36309 0.38924 1.05151 1.14492 1.50108 1.57715 1.75534 2.51849 3.01650 3.16044 3.61522 4.25904 4.60839 4.78422 4.91734 5.16275 5.54607 5.88245 6.01832 6.53141 6.73247 7.39837 8.63125 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.037032 B = 0.011871 C = 0.010094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.916648 B = 2358.085049 C = 2773.219930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.061 0.939 4 C -0.591 4.591 5 H 0.011 0.989 6 C -0.015 4.015 7 N -0.934 5.934 8 Si 1.075 2.925 9 H -0.289 1.289 10 H -0.254 1.254 11 H -0.234 1.234 12 C 0.068 3.932 13 N -0.256 5.256 14 N -0.321 5.321 15 S 0.533 5.467 16 C -0.249 4.249 17 Cl 0.046 6.954 18 H 0.059 0.941 19 H 0.059 0.941 20 H 0.038 0.962 21 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 6.966 15.244 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.065 3.935 3 H 0.079 0.921 4 C -0.629 4.629 5 H 0.029 0.971 6 C -0.213 4.213 7 N -0.570 5.570 8 Si 0.894 3.106 9 H -0.216 1.216 10 H -0.179 1.179 11 H -0.158 1.158 12 C -0.079 4.079 13 N -0.122 5.122 14 N -0.300 5.300 15 S 0.667 5.333 16 C -0.414 4.414 17 Cl 0.074 6.926 18 H 0.077 0.923 19 H 0.078 0.922 20 H 0.057 0.943 21 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.783 6.538 15.161 16.606 hybrid contribution 0.602 -0.642 -0.410 0.971 sum 2.385 5.895 14.751 16.063 Atomic orbital electron populations 1.22122 0.95749 1.00805 1.01312 1.17796 0.94056 0.94886 0.86798 0.92081 1.21887 1.40192 1.08306 0.92547 0.97072 1.27276 0.93932 1.08710 0.91383 1.70986 1.43938 1.09390 1.32664 0.83756 0.79656 0.70379 0.76814 1.21562 1.17855 1.15815 1.22665 0.96820 0.89521 0.98882 1.71361 1.20813 1.11266 1.08715 1.78643 1.16667 1.26703 1.08029 1.80631 1.38295 0.92904 1.21493 1.28054 1.09768 0.98819 1.04777 1.98355 1.85053 1.11491 1.97708 0.92255 0.92174 0.94295 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 8.85 71.98 0.64 -5.40 14 2 C 0.09 4.03 2.25 -12.29 -0.03 4.01 14 3 H 0.06 2.63 5.93 -2.39 -0.01 2.61 14 4 C -0.59 -33.77 8.79 25.60 0.22 -33.55 14 5 H 0.01 0.71 7.99 -2.91 -0.02 0.69 14 6 C -0.02 -0.86 5.29 84.65 0.45 -0.41 14 7 N -0.93 -58.81 13.70 21.45 0.29 -58.52 14 8 Si 1.07 47.48 26.29 68.60 1.80 49.28 14 9 H -0.29 -13.07 7.11 99.48 0.71 -12.37 14 10 H -0.25 -10.12 7.11 99.48 0.71 -9.41 14 11 H -0.23 -8.95 5.76 99.48 0.57 -8.38 14 12 C 0.07 2.87 5.37 41.94 0.23 3.09 14 13 N -0.26 -11.40 11.56 -51.06 -0.59 -11.99 14 14 N -0.32 -11.90 12.54 37.02 0.46 -11.43 14 15 S 0.53 14.33 23.40 -56.49 -1.32 13.01 14 16 C -0.25 -8.30 7.28 67.18 0.49 -7.81 14 17 Cl 0.05 1.27 28.48 -2.72 -0.08 1.19 14 18 H 0.06 2.08 8.14 -2.39 -0.02 2.06 14 19 H 0.06 2.56 4.88 -2.39 -0.01 2.55 14 20 H 0.04 1.74 8.06 -2.38 -0.02 1.72 14 21 H 0.25 16.20 8.73 -92.71 -0.81 15.39 14 Total: -1.00 -67.32 217.49 3.66 -63.66 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: 1.09 Total: -5.13 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 2.00 Total: -40.07 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: 0.17 Total: -81.94 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.80 Total: 49.28 kcal Atomic # 16 Polarization: 14.33 SS G_CDS: -1.32 Total: 13.01 kcal Atomic # 17 Polarization: 1.27 SS G_CDS: -0.08 Total: 1.19 kcal Total: -67.32 3.66 -63.66 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520138.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.367 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds