Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99721 * 2 1 4 4 H 1.48495 * 109.47050 * 269.99708 * 3 2 1 5 5 H 1.48500 * 109.47442 * 30.00069 * 3 2 1 6 6 H 1.48503 * 109.46850 * 150.00031 * 3 2 1 7 7 C 1.37874 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99901 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99855 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.38764 * 120.00421 * 179.97438 * 10 9 7 12 12 N 1.30427 * 126.38363 * 359.97438 * 11 10 9 13 13 O 1.41332 * 109.63075 * 179.97438 * 12 11 10 14 14 C 1.34873 * 109.48640 * 359.97438 * 13 12 11 15 15 C 1.38985 * 133.32951 * 179.97438 * 14 13 12 16 16 C 1.37823 * 119.80090 * 179.97438 * 15 14 13 17 17 C 1.38739 * 120.57255 * 0.02562 * 16 15 14 18 18 C 1.36693 * 120.47677 * 359.75288 * 17 16 15 19 19 C 1.39503 * 119.80703 * 0.48949 * 18 17 16 20 20 H 0.97005 * 120.00137 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47664 * 59.99957 * 9 7 2 22 22 H 1.09000 * 109.47191 * 299.99940 * 9 7 2 23 23 H 0.97005 * 120.00155 * 359.97438 * 10 9 7 24 24 H 1.08001 * 120.10121 * 0.02638 * 15 14 13 25 25 H 1.08003 * 119.71243 * 179.97438 * 16 15 14 26 26 H 1.08001 * 119.76155 * 179.97438 * 17 16 15 27 27 H 1.07997 * 120.09169 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3641 -2.8288 0.0009 12 7 6.3167 -1.9379 0.0005 13 8 7.5728 -2.5857 0.0012 14 6 7.3898 -3.9220 0.0026 15 6 8.2621 -5.0040 0.0034 16 6 7.7609 -6.2879 0.0054 17 6 6.3915 -6.5108 0.0063 18 6 5.5179 -5.4595 0.0102 19 6 6.0057 -4.1525 0.0029 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6800 0.8911 22 1 3.8752 -0.6804 -0.8888 23 1 3.3696 -3.3125 0.0010 24 1 9.3295 -4.8393 0.0031 25 1 8.4400 -7.1277 0.0056 26 1 6.0130 -7.5223 0.0075 27 1 4.4532 -5.6402 0.0104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260520561.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = 63.022453 kcal Electronic energy + Delta-G solvation = -13613.072213 eV Core-core repulsion = 11145.367346 eV Total energy + Delta-G solvation = -2467.704866 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.27020 -37.53152 -36.10721 -33.03592 -31.60302 -30.19014 -29.82884 -27.58427 -23.29227 -22.66030 -21.96761 -20.39200 -17.89280 -17.19485 -16.61811 -15.58915 -15.46011 -15.06480 -14.62132 -13.93985 -13.66080 -13.39222 -13.25247 -12.48286 -12.17322 -12.16524 -11.37884 -11.19994 -10.97287 -10.70137 -10.62499 -10.02362 -9.59804 -9.00454 -8.77857 -8.62969 -7.59686 -6.28552 -4.32199 0.85976 1.36749 2.72671 2.95594 3.22375 3.29431 3.36416 3.69476 3.69847 4.26874 4.52018 4.72608 4.88961 5.06308 5.08425 5.25326 5.41985 5.75536 5.86817 6.16353 6.22724 6.34213 6.59569 6.68930 6.91827 7.21975 7.42309 7.75046 8.27646 8.34059 8.70124 9.29652 10.83167 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054955 B = 0.006637 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.386406 B = 4217.826723 C = 4712.068501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.226 3.774 10 N -0.666 5.666 11 C 0.375 3.625 12 N -0.368 5.368 13 O -0.107 6.107 14 C 0.100 3.900 15 C -0.139 4.139 16 C -0.065 4.065 17 C -0.164 4.164 18 C -0.035 4.035 19 C -0.202 4.202 20 H 0.269 0.731 21 H 0.027 0.973 22 H 0.022 0.978 23 H 0.412 0.588 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -11.917 0.041 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.104 3.896 10 N -0.305 5.305 11 C 0.103 3.897 12 N -0.141 5.141 13 O -0.109 6.109 14 C 0.045 3.955 15 C -0.159 4.159 16 C -0.084 4.084 17 C -0.182 4.182 18 C -0.055 4.055 19 C -0.207 4.207 20 H 0.079 0.921 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.249 0.751 24 H 0.152 0.848 25 H 0.152 0.848 26 H 0.148 0.852 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.647 -10.365 0.042 16.351 hybrid contribution -0.243 -0.122 -0.022 0.273 sum 12.404 -10.487 0.021 16.243 Atomic orbital electron populations 1.69871 1.06207 1.27588 1.48926 1.24763 0.94810 0.99150 0.93709 0.86826 0.80597 0.83188 0.79166 1.19714 1.20723 1.18441 1.20987 0.88118 0.95402 1.53913 0.90061 1.19664 0.95798 0.77319 0.96829 1.44410 0.98455 1.11147 1.76527 1.21372 0.88247 0.89528 0.90578 1.80452 0.86150 1.10399 1.37053 1.89131 1.26647 1.12905 1.82185 1.20243 0.93591 0.86963 0.94690 1.20010 0.99060 0.89221 1.07604 1.21049 0.95613 0.95730 0.96005 1.20689 0.93133 0.98937 1.05469 1.20448 1.00484 0.89971 0.94634 1.20590 0.92574 0.93616 1.13923 0.92100 0.95566 0.96038 0.75116 0.84767 0.84810 0.85214 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.32 15 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 15 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 15 7 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 15 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 15 9 C 0.23 5.44 4.84 -5.20 -0.03 5.42 15 10 N -0.67 -13.66 5.71 -59.74 -0.34 -14.01 15 11 C 0.37 7.47 8.15 -153.65 -1.25 6.22 15 12 N -0.37 -7.99 12.49 32.52 0.41 -7.58 15 13 O -0.11 -2.09 12.06 7.55 0.09 -2.00 15 14 C 0.10 1.64 7.47 -38.52 -0.29 1.35 15 15 C -0.14 -1.69 10.07 -39.46 -0.40 -2.09 15 16 C -0.06 -0.64 10.02 -39.55 -0.40 -1.04 15 17 C -0.16 -1.71 9.98 -39.95 -0.40 -2.10 15 18 C -0.04 -0.46 10.05 -39.67 -0.40 -0.86 15 19 C -0.20 -3.35 6.36 -105.05 -0.67 -4.02 15 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.03 0.66 7.20 -51.93 -0.37 0.29 15 22 H 0.02 0.54 7.57 -51.93 -0.39 0.15 15 23 H 0.41 7.49 8.45 -40.82 -0.34 7.14 15 24 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 25 H 0.13 0.86 8.06 -52.48 -0.42 0.43 15 26 H 0.13 0.97 8.06 -52.49 -0.42 0.55 15 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 LS Contribution 246.27 15.07 3.71 3.71 Total: -1.00 -30.96 246.27 -6.67 -37.63 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -2.38 Total: 1.21 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -4.26 Total: -10.10 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.84 Total: -46.90 kcal Atomic # 8 Polarization: -2.09 SS G_CDS: 0.09 Total: -2.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.96 -6.67 -37.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520561.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.657 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds