Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99721 * 2 1 4 4 H 1.48495 * 109.47050 * 269.99708 * 3 2 1 5 5 H 1.48500 * 109.47442 * 30.00069 * 3 2 1 6 6 H 1.48503 * 109.46850 * 150.00031 * 3 2 1 7 7 C 1.37874 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99901 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99855 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.38764 * 120.00421 * 179.97438 * 10 9 7 12 12 N 1.30427 * 126.38363 * 359.97438 * 11 10 9 13 13 O 1.41332 * 109.63075 * 179.97438 * 12 11 10 14 14 C 1.34873 * 109.48640 * 359.97438 * 13 12 11 15 15 C 1.38985 * 133.32951 * 179.97438 * 14 13 12 16 16 C 1.37823 * 119.80090 * 179.97438 * 15 14 13 17 17 C 1.38739 * 120.57255 * 0.02562 * 16 15 14 18 18 C 1.36693 * 120.47677 * 359.75288 * 17 16 15 19 19 C 1.39503 * 119.80703 * 0.48949 * 18 17 16 20 20 H 0.97005 * 120.00137 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47664 * 59.99957 * 9 7 2 22 22 H 1.09000 * 109.47191 * 299.99940 * 9 7 2 23 23 H 0.97005 * 120.00155 * 359.97438 * 10 9 7 24 24 H 1.08001 * 120.10121 * 0.02638 * 15 14 13 25 25 H 1.08003 * 119.71243 * 179.97438 * 16 15 14 26 26 H 1.08001 * 119.76155 * 179.97438 * 17 16 15 27 27 H 1.07997 * 120.09169 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3641 -2.8288 0.0009 12 7 6.3167 -1.9379 0.0005 13 8 7.5728 -2.5857 0.0012 14 6 7.3898 -3.9220 0.0026 15 6 8.2621 -5.0040 0.0034 16 6 7.7609 -6.2879 0.0054 17 6 6.3915 -6.5108 0.0063 18 6 5.5179 -5.4595 0.0102 19 6 6.0057 -4.1525 0.0029 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6800 0.8911 22 1 3.8752 -0.6804 -0.8888 23 1 3.3696 -3.3125 0.0010 24 1 9.3295 -4.8393 0.0031 25 1 8.4400 -7.1277 0.0056 26 1 6.0130 -7.5223 0.0075 27 1 4.4532 -5.6402 0.0104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520561.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = 42.559954 kcal Electronic energy + Delta-G solvation = -13613.959533 eV Core-core repulsion = 11145.367346 eV Total energy + Delta-G solvation = -2468.592187 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.54050 -38.59647 -37.74440 -34.99939 -33.16392 -31.32628 -30.96678 -29.48711 -24.76838 -23.88478 -23.38310 -21.89638 -19.52286 -18.41590 -18.28065 -16.97847 -16.88983 -16.38638 -16.03137 -15.52807 -15.19779 -14.88504 -14.59454 -14.39245 -13.19398 -13.11872 -13.10666 -12.98883 -12.46714 -12.12220 -12.03559 -11.94589 -11.72548 -10.93986 -10.04048 -9.83421 -9.09689 -8.44411 -6.52554 -0.20743 0.36422 1.30252 1.32669 1.35615 1.45046 1.58188 2.24351 2.31239 2.70071 2.90759 3.31186 3.68041 3.85928 4.13895 4.31566 4.46990 4.59731 4.69501 4.91824 4.95366 5.15987 5.19870 5.32024 5.44144 5.67592 5.83897 6.10823 6.36935 6.48627 6.84381 7.14609 8.70275 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054955 B = 0.006637 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.386406 B = 4217.826723 C = 4712.068501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.241 3.759 10 N -0.669 5.669 11 C 0.367 3.633 12 N -0.413 5.413 13 O -0.122 6.122 14 C 0.067 3.933 15 C -0.140 4.140 16 C -0.045 4.045 17 C -0.148 4.148 18 C -0.047 4.047 19 C -0.225 4.225 20 H 0.274 0.726 21 H 0.015 0.985 22 H 0.013 0.987 23 H 0.421 0.579 24 H 0.159 0.841 25 H 0.183 0.817 26 H 0.170 0.830 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.237 -14.203 0.016 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.118 3.882 10 N -0.310 5.310 11 C 0.096 3.904 12 N -0.184 5.184 13 O -0.126 6.126 14 C 0.014 3.986 15 C -0.160 4.160 16 C -0.063 4.063 17 C -0.165 4.165 18 C -0.067 4.067 19 C -0.230 4.230 20 H 0.083 0.917 21 H 0.033 0.967 22 H 0.031 0.969 23 H 0.259 0.741 24 H 0.176 0.824 25 H 0.200 0.800 26 H 0.188 0.812 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.472 -12.679 0.017 19.241 hybrid contribution -0.719 0.327 -0.013 0.790 sum 13.753 -12.353 0.003 18.486 Atomic orbital electron populations 1.69971 1.07672 1.28771 1.50262 1.25561 0.95555 1.02608 0.93398 0.85871 0.79323 0.79263 0.79559 1.18895 1.19619 1.18344 1.21187 0.89585 0.94760 1.53208 0.92143 1.19237 0.93812 0.79350 0.95794 1.44051 0.99295 1.09929 1.77712 1.21588 0.87394 0.91488 0.89974 1.80288 0.87555 1.12670 1.37908 1.89030 1.25185 1.15002 1.83390 1.20852 0.94594 0.86373 0.96797 1.20517 0.99937 0.88828 1.06691 1.21679 0.96257 0.95943 0.92440 1.21245 0.93122 0.99906 1.02277 1.20785 1.02023 0.89047 0.94848 1.20629 0.92393 0.93624 1.16322 0.91677 0.96733 0.96870 0.74074 0.82352 0.79965 0.81207 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.96 21.45 0.30 -55.08 15 2 C 0.03 1.68 5.47 84.65 0.46 2.14 15 3 Si 0.94 43.99 27.47 68.60 1.88 45.88 15 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.26 -12.06 6.54 99.48 0.65 -11.41 15 7 C -0.55 -30.48 9.83 25.60 0.25 -30.22 15 8 H 0.06 3.52 7.84 -2.91 -0.02 3.50 15 9 C 0.24 11.94 4.84 85.63 0.41 12.36 15 10 N -0.67 -28.23 5.71 -342.91 -1.96 -30.19 15 11 C 0.37 15.00 8.15 135.83 1.11 16.11 15 12 N -0.41 -18.58 12.49 -51.04 -0.64 -19.21 15 13 O -0.12 -4.87 12.06 29.39 0.35 -4.52 15 14 C 0.07 2.16 7.47 22.95 0.17 2.33 15 15 C -0.14 -2.96 10.07 22.35 0.23 -2.73 15 16 C -0.04 -0.64 10.02 22.29 0.22 -0.42 15 17 C -0.15 -2.34 9.98 22.03 0.22 -2.12 15 18 C -0.05 -1.11 10.05 22.21 0.22 -0.89 15 19 C -0.22 -7.36 6.36 -20.14 -0.13 -7.48 15 20 H 0.27 15.19 8.31 -92.70 -0.77 14.42 15 21 H 0.01 0.76 7.20 -2.39 -0.02 0.75 15 22 H 0.01 0.68 7.57 -2.39 -0.02 0.67 15 23 H 0.42 15.75 8.45 -92.70 -0.78 14.96 15 24 H 0.16 2.49 8.06 -2.91 -0.02 2.47 15 25 H 0.18 0.95 8.06 -2.91 -0.02 0.93 15 26 H 0.17 1.41 8.06 -2.91 -0.02 1.39 15 27 H 0.14 2.86 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -69.82 246.27 3.47 -66.35 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.36 Total: 7.70 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 3.17 Total: -10.94 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -2.30 Total: -104.48 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: 0.35 Total: -4.52 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -69.82 3.47 -66.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520561.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.911 kcal (2) G-P(sol) polarization free energy of solvation -69.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds