Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00321 * 2 1 4 4 C 1.50700 * 110.26940 * 296.01532 * 3 2 1 5 5 H 1.07999 * 120.00236 * 148.98422 * 4 3 2 6 6 C 1.37874 * 119.99992 * 328.98279 * 4 3 2 7 7 N 1.31516 * 120.00409 * 173.57110 * 6 4 3 8 8 Si 1.86808 * 120.00135 * 353.57036 * 6 4 3 9 9 H 1.48501 * 109.47005 * 87.24471 * 8 6 4 10 10 H 1.48502 * 109.46720 * 327.24700 * 8 6 4 11 11 H 1.48501 * 109.47138 * 207.24840 * 8 6 4 12 12 C 1.54342 * 110.38807 * 173.88150 * 3 2 1 13 13 C 1.54350 * 102.39172 * 267.38325 * 12 3 2 14 14 C 1.51366 * 105.16871 * 333.64950 * 13 12 3 15 15 C 1.38497 * 130.38696 * 197.16614 * 14 13 12 16 16 C 1.38111 * 120.21171 * 180.02562 * 15 14 13 17 17 C 1.38256 * 119.93509 * 0.02562 * 16 15 14 18 18 C 1.38100 * 119.93470 * 359.97438 * 17 16 15 19 19 C 1.38215 * 109.75861 * 17.19490 * 14 13 12 20 20 H 1.08997 * 109.46575 * 292.95475 * 1 2 3 21 21 H 1.08999 * 109.46825 * 52.95423 * 1 2 3 22 22 H 1.08998 * 109.47326 * 172.95704 * 1 2 3 23 23 H 1.00897 * 111.00255 * 123.96258 * 2 1 3 24 24 H 0.96994 * 120.00320 * 180.02562 * 7 6 4 25 25 H 1.09002 * 110.81954 * 25.60733 * 12 3 2 26 26 H 1.09000 * 110.82484 * 149.15451 * 12 3 2 27 27 H 1.09006 * 110.30244 * 214.72709 * 13 12 3 28 28 H 1.09001 * 110.38398 * 92.62225 * 13 12 3 29 29 H 1.07991 * 119.89339 * 0.02562 * 15 14 13 30 30 H 1.08001 * 120.02925 * 179.97438 * 16 15 14 31 31 H 1.07995 * 120.02994 * 180.02562 * 17 16 15 32 32 H 1.07996 * 119.89146 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6038 2.0810 -1.2704 5 1 1.4423 3.1489 -1.2648 6 6 1.4516 1.3671 -2.4400 7 7 0.9883 1.9615 -3.5179 8 14 1.9034 -0.4447 -2.4939 9 1 0.7366 -1.2587 -2.0682 10 1 3.0443 -0.6978 -1.5776 11 1 2.2886 -0.8179 -3.8787 12 6 3.5312 1.3578 0.1542 13 6 3.7117 1.4812 1.6821 14 6 2.4692 2.1938 2.1715 15 6 2.2211 2.8455 3.3682 16 6 0.9921 3.4320 3.5982 17 6 0.0055 3.3685 2.6317 18 6 0.2511 2.7191 1.4379 19 6 1.4831 2.1306 1.2051 20 1 -0.3632 0.4008 0.9463 21 1 -0.3633 0.6191 -0.8202 22 1 -0.3634 -1.0199 -0.1260 23 1 1.8306 -0.5262 0.7812 24 1 0.8809 1.4591 -4.3406 25 1 3.9489 0.4195 -0.2108 26 1 3.9797 2.2084 -0.3589 27 1 4.6003 2.0694 1.9117 28 1 3.7851 0.4932 2.1368 29 1 2.9911 2.8951 4.1237 30 1 0.8016 3.9390 4.5326 31 1 -0.9559 3.8269 2.8098 32 1 -0.5198 2.6703 0.6832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523603.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = 15.734715 kcal Electronic energy + Delta-G solvation = -15023.947845 eV Core-core repulsion = 12755.451434 eV Total energy + Delta-G solvation = -2268.496411 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.31041 -37.81486 -34.89605 -34.07123 -31.67518 -29.94616 -28.85544 -26.35565 -24.61728 -23.39919 -21.63164 -20.93858 -18.64259 -17.67585 -16.60844 -16.25041 -15.93779 -15.80963 -15.28476 -14.69071 -14.52896 -14.13400 -13.88318 -13.48051 -13.25493 -12.80004 -12.57062 -12.33932 -12.12740 -11.93753 -11.89854 -11.59869 -11.46116 -11.25901 -10.48643 -9.59738 -9.39860 -9.04758 -8.18724 -6.29738 0.56009 0.60406 1.64720 1.67733 1.92423 2.66480 2.94744 3.14946 3.55495 3.74269 4.00784 4.25646 4.27903 4.44363 4.45792 4.51331 4.69935 4.70611 4.78473 4.88487 5.06572 5.16348 5.22473 5.25107 5.35465 5.39840 5.65191 5.66897 5.73588 5.89341 5.98207 6.23414 6.43642 6.58234 6.86760 7.45933 8.92398 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.012244 C = 0.011206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.023517 B = 2286.283857 C = 2498.133689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.669 5.669 3 C 0.241 3.759 4 C -0.506 4.506 5 H 0.022 0.978 6 C 0.021 3.979 7 N -0.954 5.954 8 Si 1.034 2.966 9 H -0.286 1.286 10 H -0.254 1.254 11 H -0.371 1.371 12 C -0.117 4.117 13 C -0.074 4.074 14 C -0.113 4.113 15 C -0.116 4.116 16 C -0.124 4.124 17 C -0.135 4.135 18 C -0.114 4.114 19 C -0.113 4.113 20 H 0.034 0.966 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.344 0.656 24 H 0.260 0.740 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -2.582 15.603 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.301 5.301 3 C 0.151 3.849 4 C -0.544 4.544 5 H 0.040 0.960 6 C -0.177 4.177 7 N -0.593 5.593 8 Si 0.873 3.127 9 H -0.214 1.214 10 H -0.180 1.180 11 H -0.308 1.308 12 C -0.156 4.156 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.153 4.153 18 C -0.133 4.133 19 C -0.115 4.115 20 H 0.053 0.947 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.164 0.836 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.312 -2.653 14.788 15.201 hybrid contribution -0.517 -0.013 -0.200 0.555 sum 1.795 -2.666 14.588 14.938 Atomic orbital electron populations 1.22147 0.87995 1.01075 1.00445 1.60003 1.08705 1.15012 1.46416 1.18520 0.91969 0.83933 0.90456 1.20811 1.47448 0.93279 0.92836 0.96008 1.25981 0.92892 1.04449 0.94343 1.70138 1.47052 1.39547 1.02605 0.84199 0.80168 0.78251 0.70071 1.21392 1.17961 1.30833 1.22593 0.95756 1.01787 0.95434 1.21096 0.95012 1.00468 0.94519 1.20994 0.96745 0.99098 0.94528 1.20914 0.98088 0.98175 0.96193 1.21323 0.92917 1.00092 0.99873 1.21290 1.00633 0.99938 0.93447 1.20793 0.96736 0.98379 0.97344 1.21521 0.94375 0.98411 0.97187 0.94741 0.93334 0.91335 0.83622 0.93207 0.90443 0.92485 0.89416 0.88770 0.83736 0.82975 0.84503 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.31 7.93 127.69 1.01 2.32 16 2 N -0.67 -27.36 2.31 -497.16 -1.15 -28.51 16 3 C 0.24 10.72 0.30 2.70 0.00 10.72 16 4 C -0.51 -28.84 7.56 25.60 0.19 -28.65 16 5 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 6 C 0.02 1.24 4.70 84.65 0.40 1.63 16 7 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 8 Si 1.03 51.83 23.79 68.60 1.63 53.47 16 9 H -0.29 -13.68 6.19 99.48 0.62 -13.07 16 10 H -0.25 -11.52 5.30 99.48 0.53 -11.00 16 11 H -0.37 -19.85 7.11 99.48 0.71 -19.14 16 12 C -0.12 -4.58 5.78 31.51 0.18 -4.40 16 13 C -0.07 -2.22 6.76 30.52 0.21 -2.01 16 14 C -0.11 -3.78 6.14 -19.60 -0.12 -3.90 16 15 C -0.12 -3.18 10.04 22.30 0.22 -2.96 16 16 C -0.12 -3.26 10.05 22.24 0.22 -3.03 16 17 C -0.14 -4.18 10.05 22.24 0.22 -3.95 16 18 C -0.11 -4.46 8.10 22.30 0.18 -4.28 16 19 C -0.11 -4.57 4.48 -19.59 -0.09 -4.65 16 20 H 0.03 1.27 6.29 -2.39 -0.02 1.26 16 21 H 0.05 2.33 6.20 -2.39 -0.01 2.31 16 22 H 0.07 2.45 7.92 -2.39 -0.02 2.43 16 23 H 0.34 11.80 8.76 -89.70 -0.79 11.02 16 24 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 25 H 0.08 2.93 6.61 -2.39 -0.02 2.91 16 26 H 0.06 2.42 7.91 -2.39 -0.02 2.40 16 27 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.14 2.96 8.06 -2.92 -0.02 2.94 16 30 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 32 H 0.09 4.04 7.84 -2.91 -0.02 4.02 16 Total: -1.00 -69.34 248.89 3.47 -65.87 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.05 Total: 13.50 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 2.64 Total: -43.15 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -0.85 Total: -89.68 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 1.63 Total: 53.47 kcal Total: -69.34 3.47 -65.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523603.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.600 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds