Wall clock time and date at job start Mon Mar 30 2020 02:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47332 * 270.00399 * 3 2 1 5 5 H 1.48493 * 109.47138 * 30.00609 * 3 2 1 6 6 H 1.48506 * 109.47022 * 150.00279 * 3 2 1 7 7 C 1.37875 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00126 * 179.97438 * 7 2 1 10 10 O 1.42898 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.35949 * 117.00042 * 179.97438 * 10 9 7 12 12 C 1.38081 * 120.18256 * 359.96624 * 11 10 9 13 13 C 1.38914 * 120.52485 * 179.97438 * 12 11 10 14 14 C 1.36393 * 120.74142 * 0.04348 * 13 12 11 15 15 C 1.40167 * 119.94079 * 359.97401 * 14 13 12 16 16 C 1.41606 * 133.54497 * 180.02562 * 15 14 13 17 17 N 1.30136 * 108.68958 * 180.02562 * 16 15 14 18 18 N 1.40035 * 109.74605 * 359.97438 * 17 16 15 19 19 H 0.97003 * 125.96313 * 179.97438 * 18 17 16 20 20 C 1.37231 * 108.07237 * 0.02562 * 18 17 16 21 21 H 0.97008 * 120.00159 * 359.97438 * 1 2 3 22 22 H 1.09010 * 109.47291 * 59.99689 * 9 7 2 23 23 H 1.09004 * 109.47739 * 299.99926 * 9 7 2 24 24 H 1.07993 * 119.73494 * 0.02562 * 12 11 10 25 25 H 1.08001 * 119.62743 * 180.02562 * 13 12 11 26 26 H 1.08008 * 120.02812 * 180.02562 * 14 13 12 27 27 H 1.08007 * 125.65118 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 8 3.9877 -2.5414 -0.0010 11 6 5.3355 -2.7195 -0.0020 12 6 6.1801 -1.6272 -0.0038 13 6 7.5583 -1.8009 -0.0043 14 6 8.1034 -3.0512 -0.0040 15 6 7.2696 -4.1779 -0.0025 16 6 7.5142 -5.5727 -0.0014 17 7 6.3721 -6.1964 -0.0008 18 7 5.3252 -5.2664 -0.0009 19 1 4.3778 -5.4751 -0.0009 20 6 5.8733 -4.0083 -0.0022 21 1 -0.4851 0.8401 0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8745 -0.6801 -0.8911 24 1 5.7659 -0.6298 -0.0040 25 1 8.2055 -0.9363 -0.0053 26 1 9.1766 -3.1730 -0.0040 27 1 8.4875 -6.0411 -0.0018 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555036.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:56 Heat of formation + Delta-G solvation = 23.951658 kcal Electronic energy + Delta-G solvation = -13801.284004 eV Core-core repulsion = 11331.884901 eV Total energy + Delta-G solvation = -2469.399103 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.44261 -40.00007 -37.29504 -35.04544 -33.03429 -30.99644 -30.60907 -29.48590 -25.14648 -23.45109 -23.22725 -22.14614 -19.82693 -18.64850 -18.21739 -17.16780 -16.79955 -16.48828 -15.98187 -15.57695 -15.45682 -14.81905 -14.49500 -14.12120 -13.35788 -13.16533 -12.67243 -12.63827 -12.41123 -12.00413 -11.94405 -11.84611 -11.50931 -11.04357 -10.85768 -9.64772 -8.53570 -8.46049 -6.57694 -0.04791 0.57228 1.31094 1.34319 1.44584 1.59758 1.73163 2.23349 2.45047 2.83903 2.87184 3.69210 3.78308 4.06045 4.10750 4.26732 4.51209 4.52665 4.76033 4.77221 4.98170 5.19309 5.37683 5.52778 5.60094 5.80308 5.99480 6.20673 6.46078 6.54936 6.73545 7.06684 8.70489 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.046369 B = 0.007550 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.710944 B = 3707.519149 C = 4296.085666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.239 1.239 7 C -0.557 4.557 8 H 0.032 0.968 9 C 0.185 3.815 10 O -0.339 6.339 11 C 0.082 3.918 12 C -0.184 4.184 13 C -0.116 4.116 14 C -0.075 4.075 15 C -0.158 4.158 16 C 0.080 3.920 17 N -0.275 5.275 18 N -0.510 5.510 19 H 0.443 0.557 20 C 0.077 3.923 21 H 0.276 0.724 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.132 0.868 25 H 0.162 0.838 26 H 0.173 0.827 27 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.827 -3.121 0.002 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.162 1.162 7 C -0.594 4.594 8 H 0.050 0.950 9 C 0.111 3.889 10 O -0.253 6.253 11 C 0.034 3.966 12 C -0.206 4.206 13 C -0.135 4.135 14 C -0.095 4.095 15 C -0.166 4.166 16 C -0.114 4.114 17 N -0.091 5.091 18 N -0.225 5.225 19 H 0.287 0.713 20 C -0.040 4.040 21 H 0.086 0.914 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.150 0.850 25 H 0.180 0.820 26 H 0.191 0.809 27 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 18.887 -4.332 0.005 19.378 hybrid contribution -1.036 1.354 -0.014 1.704 sum 17.852 -2.979 -0.009 18.098 Atomic orbital electron populations 1.70006 1.08320 1.29178 1.49918 1.25803 0.95826 1.03421 0.92916 0.85652 0.79745 0.77179 0.80162 1.18008 1.19598 1.16189 1.21006 0.90130 0.94292 1.54012 0.94967 1.20647 0.93502 0.78190 0.96581 1.86027 1.18544 1.32357 1.88389 1.18535 0.83729 0.91864 1.02504 1.21383 0.95451 0.97123 1.06619 1.20814 0.92805 0.98933 1.00923 1.20685 1.00806 0.89216 0.98840 1.19212 0.90340 0.95998 1.11064 1.24655 0.98485 0.90159 0.98146 1.76581 0.95753 1.16854 1.19882 1.46174 1.08686 1.01279 1.66410 0.71259 1.18566 0.94625 0.85425 1.05388 0.91435 0.95315 0.95437 0.84986 0.82012 0.80940 0.74141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.96 21.45 0.30 -57.50 15 2 C 0.02 1.13 5.47 84.66 0.46 1.59 15 3 Si 0.95 41.50 27.47 68.60 1.88 43.39 15 4 H -0.26 -10.52 7.11 99.48 0.71 -9.82 15 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 6 H -0.24 -9.38 6.54 99.48 0.65 -8.73 15 7 C -0.56 -33.39 9.99 25.60 0.26 -33.13 15 8 H 0.03 2.18 8.06 -2.91 -0.02 2.16 15 9 C 0.18 9.13 3.56 71.23 0.25 9.39 15 10 O -0.34 -16.32 10.13 -92.98 -0.94 -17.27 15 11 C 0.08 3.25 6.70 22.57 0.15 3.40 15 12 C -0.18 -6.01 9.04 22.39 0.20 -5.81 15 13 C -0.12 -2.72 9.95 22.00 0.22 -2.50 15 14 C -0.08 -1.57 10.05 22.31 0.22 -1.35 15 15 C -0.16 -4.26 6.17 -21.39 -0.13 -4.39 15 16 C 0.08 1.82 12.04 85.78 1.03 2.85 15 17 N -0.28 -8.06 12.57 -56.22 -0.71 -8.76 15 18 N -0.51 -17.28 7.45 -51.30 -0.38 -17.66 15 19 H 0.44 14.58 8.96 -213.36 -1.91 12.67 15 20 C 0.08 2.72 7.28 39.23 0.29 3.00 15 21 H 0.28 15.59 8.31 -92.70 -0.77 14.82 15 22 H 0.03 1.36 6.72 -2.38 -0.02 1.34 15 23 H 0.03 1.29 7.09 -2.39 -0.02 1.27 15 24 H 0.13 4.26 6.27 -2.91 -0.02 4.25 15 25 H 0.16 2.56 8.06 -2.91 -0.02 2.54 15 26 H 0.17 1.98 8.06 -2.91 -0.02 1.95 15 27 H 0.24 2.64 8.06 -2.91 -0.02 2.62 15 Total: -1.00 -72.73 242.17 2.35 -70.38 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.76 Total: 14.37 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 2.96 Total: -26.94 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -0.79 Total: -83.92 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.94 Total: -17.27 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.88 Total: 43.39 kcal Total: -72.73 2.35 -70.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555036.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.332 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds