Wall clock time and date at job start Mon Mar 30 2020 02:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46909 * 109.46754 * 2 1 4 4 C 1.47909 * 110.99754 * 170.15190 * 3 2 1 5 5 C 1.54609 * 102.62568 * 94.52658 * 4 3 2 6 6 H 1.08996 * 110.89554 * 267.13177 * 5 4 3 7 7 C 1.50694 * 110.74135 * 143.87032 * 5 4 3 8 8 H 1.08007 * 120.00269 * 281.52353 * 7 5 4 9 9 C 1.37877 * 119.99860 * 101.51814 * 7 5 4 10 10 N 1.31513 * 120.00151 * 184.85161 * 9 7 5 11 11 Si 1.86802 * 119.99918 * 4.85652 * 9 7 5 12 12 H 1.48500 * 109.46869 * 84.79438 * 11 9 7 13 13 H 1.48494 * 109.47123 * 324.79582 * 11 9 7 14 14 H 1.48501 * 109.47068 * 204.79222 * 11 9 7 15 15 C 1.51578 * 102.82694 * 25.53588 * 5 4 3 16 16 C 1.37928 * 131.55405 * 164.01841 * 15 5 4 17 17 C 1.38302 * 120.07545 * 180.27303 * 16 15 5 18 18 C 1.38305 * 119.88478 * 0.02562 * 17 16 15 19 19 C 1.37910 * 120.26582 * 359.87889 * 18 17 16 20 20 C 1.38964 * 107.96100 * 344.04626 * 15 5 4 21 21 H 1.08994 * 109.47803 * 59.99681 * 1 2 3 22 22 H 1.08997 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46954 * 299.99990 * 1 2 3 24 24 H 1.08994 * 109.47150 * 240.00584 * 2 1 3 25 25 H 1.08993 * 109.47366 * 119.99682 * 2 1 3 26 26 H 1.09005 * 110.78198 * 336.24791 * 4 3 2 27 27 H 1.08997 * 110.77735 * 212.81137 * 4 3 2 28 28 H 0.96996 * 120.00500 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.95808 * 0.29850 * 16 15 5 30 30 H 1.08003 * 120.05363 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.86273 * 179.85147 * 18 17 16 32 32 H 1.07996 * 119.89986 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4790 1.4314 0.2362 5 6 4.0524 1.4750 -1.1990 6 1 4.2788 0.4711 -1.5579 7 6 5.2781 2.3497 -1.2576 8 1 5.1739 3.4244 -1.2844 9 6 6.5326 1.7781 -1.2770 10 7 7.6034 2.5403 -1.2318 11 14 6.7114 -0.0791 -1.3677 12 1 6.6423 -0.5144 -2.7858 13 1 5.6144 -0.7201 -0.5991 14 1 8.0198 -0.4792 -0.7903 15 6 2.9176 2.0869 -1.9963 16 6 2.8841 2.6531 -3.2535 17 6 1.6970 3.1528 -3.7572 18 6 0.5431 3.0842 -2.9978 19 6 0.5709 2.5173 -1.7409 20 6 1.7627 2.0082 -1.2275 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5137 0.8899 26 1 3.8147 0.5360 0.7595 27 1 3.7528 2.3296 0.7895 28 1 8.4859 2.1382 -1.2450 29 1 3.7859 2.7059 -3.8454 30 1 1.6712 3.5964 -4.7416 31 1 -0.3833 3.4767 -3.3905 32 1 -0.3335 2.4672 -1.1528 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:02 Heat of formation + Delta-G solvation = 35.959410 kcal Electronic energy + Delta-G solvation = -14590.728379 eV Core-core repulsion = 12323.108977 eV Total energy + Delta-G solvation = -2267.619403 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13737 -36.26136 -33.66093 -31.89438 -30.11097 -28.53116 -28.27970 -24.20261 -22.60151 -22.22799 -20.10140 -19.76427 -17.10521 -16.05548 -15.18984 -14.92347 -14.67820 -13.97155 -13.73622 -13.62058 -12.87529 -12.55703 -12.11150 -11.91919 -11.81135 -11.52168 -11.20157 -11.11118 -10.99154 -10.62294 -10.52715 -9.98136 -9.70056 -9.39490 -8.83448 -8.63122 -8.06951 -7.24621 -6.17379 -4.16832 1.94869 2.07038 3.19943 3.27840 3.29258 4.25778 4.31368 4.43515 5.08793 5.28309 5.40476 5.51552 5.56312 5.63623 5.68510 5.88187 6.00107 6.07669 6.13533 6.17292 6.25963 6.38506 6.49005 6.60893 6.67006 6.99009 7.03512 7.14642 7.28493 7.34832 7.60537 7.65076 7.95475 8.42936 8.88658 9.43556 10.95339 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.011557 C = 0.009232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.655794 B = 2422.231455 C = 3032.129583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 N -0.500 5.500 4 C 0.049 3.951 5 C 0.021 3.979 6 H 0.049 0.951 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.876 3.124 12 H -0.275 1.275 13 H -0.268 1.268 14 H -0.286 1.286 15 C -0.092 4.092 16 C -0.085 4.085 17 C -0.140 4.140 18 C -0.128 4.128 19 C -0.121 4.121 20 C 0.077 3.923 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.266 0.734 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 -4.151 -0.894 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.073 4.073 3 N -0.218 5.218 4 C -0.078 4.078 5 C 0.001 3.999 6 H 0.067 0.933 7 C -0.539 4.539 8 H 0.096 0.904 9 C -0.129 4.129 10 N -0.531 5.531 11 Si 0.704 3.296 12 H -0.201 1.201 13 H -0.193 1.193 14 H -0.212 1.212 15 C -0.094 4.094 16 C -0.104 4.104 17 C -0.159 4.159 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.019 4.019 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.135 -3.938 -0.413 12.764 hybrid contribution 0.710 -1.290 -0.622 1.599 sum -11.425 -5.228 -1.035 12.607 Atomic orbital electron populations 1.21904 0.95281 1.01083 1.02656 1.22115 0.95847 0.88582 1.00732 1.60396 1.17510 1.14816 1.29054 1.23609 0.82509 1.02062 0.99595 1.19406 0.93532 0.96537 0.90423 0.93277 1.20730 0.87602 0.94480 1.51117 0.90444 1.25079 0.95808 0.97737 0.94242 1.69885 0.98042 1.35394 1.49770 0.86872 0.77432 0.86474 0.78863 1.20055 1.19339 1.21248 1.21556 0.96395 0.97726 0.93760 1.20500 0.97510 0.97169 0.95184 1.20983 0.92909 1.02231 0.99768 1.20708 0.97960 1.01407 0.94567 1.20387 0.96146 1.01411 0.96107 1.19627 0.94121 0.98372 0.89750 0.92116 0.92734 0.92124 0.94727 0.90845 0.91664 0.89169 0.92434 0.86099 0.86732 0.86734 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.77 37.16 0.36 -1.66 16 2 C 0.05 0.86 5.47 -3.82 -0.02 0.84 16 3 N -0.50 -9.63 5.06 -169.01 -0.86 -10.48 16 4 C 0.05 1.04 6.52 -2.42 -0.02 1.02 16 5 C 0.02 0.49 2.67 -91.65 -0.24 0.25 16 6 H 0.05 1.18 5.23 -51.93 -0.27 0.91 16 7 C -0.50 -13.79 8.76 -34.44 -0.30 -14.09 16 8 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 11 Si 0.88 20.95 27.03 -169.99 -4.60 16.35 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.27 -6.11 6.76 56.52 0.38 -5.73 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 C -0.09 -2.02 5.65 -104.03 -0.59 -2.60 16 16 C -0.08 -1.72 9.88 -39.67 -0.39 -2.11 16 17 C -0.14 -2.37 10.06 -39.53 -0.40 -2.77 16 18 C -0.13 -2.02 10.02 -39.68 -0.40 -2.41 16 19 C -0.12 -2.06 8.53 -39.27 -0.34 -2.40 16 20 C 0.08 1.53 5.29 -83.41 -0.44 1.09 16 21 H 0.06 0.83 5.56 -51.93 -0.29 0.54 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 24 H 0.03 0.59 8.06 -51.93 -0.42 0.18 16 25 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 26 H 0.06 1.30 7.60 -51.93 -0.39 0.91 16 27 H 0.09 2.02 7.91 -51.93 -0.41 1.61 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 30 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 32 H 0.11 1.70 7.16 -52.49 -0.38 1.32 16 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -29.34 261.30 -7.87 -37.21 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.26 Total: 1.71 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.87 Total: -22.87 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.08 Total: -36.34 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.60 Total: 16.35 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.34 -7.87 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.165 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds