Wall clock time and date at job start Mon Mar 30 2020 02:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46909 * 109.46754 * 2 1 4 4 C 1.47909 * 110.99754 * 170.15190 * 3 2 1 5 5 C 1.54609 * 102.62568 * 94.52658 * 4 3 2 6 6 H 1.08996 * 110.89554 * 267.13177 * 5 4 3 7 7 C 1.50694 * 110.74135 * 143.87032 * 5 4 3 8 8 H 1.08007 * 120.00269 * 281.52353 * 7 5 4 9 9 C 1.37877 * 119.99860 * 101.51814 * 7 5 4 10 10 N 1.31513 * 120.00151 * 184.85161 * 9 7 5 11 11 Si 1.86802 * 119.99918 * 4.85652 * 9 7 5 12 12 H 1.48500 * 109.46869 * 84.79438 * 11 9 7 13 13 H 1.48494 * 109.47123 * 324.79582 * 11 9 7 14 14 H 1.48501 * 109.47068 * 204.79222 * 11 9 7 15 15 C 1.51578 * 102.82694 * 25.53588 * 5 4 3 16 16 C 1.37928 * 131.55405 * 164.01841 * 15 5 4 17 17 C 1.38302 * 120.07545 * 180.27303 * 16 15 5 18 18 C 1.38305 * 119.88478 * 0.02562 * 17 16 15 19 19 C 1.37910 * 120.26582 * 359.87889 * 18 17 16 20 20 C 1.38964 * 107.96100 * 344.04626 * 15 5 4 21 21 H 1.08994 * 109.47803 * 59.99681 * 1 2 3 22 22 H 1.08997 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46954 * 299.99990 * 1 2 3 24 24 H 1.08994 * 109.47150 * 240.00584 * 2 1 3 25 25 H 1.08993 * 109.47366 * 119.99682 * 2 1 3 26 26 H 1.09005 * 110.78198 * 336.24791 * 4 3 2 27 27 H 1.08997 * 110.77735 * 212.81137 * 4 3 2 28 28 H 0.96996 * 120.00500 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.95808 * 0.29850 * 16 15 5 30 30 H 1.08003 * 120.05363 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.86273 * 179.85147 * 18 17 16 32 32 H 1.07996 * 119.89986 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4790 1.4314 0.2362 5 6 4.0524 1.4750 -1.1990 6 1 4.2788 0.4711 -1.5579 7 6 5.2781 2.3497 -1.2576 8 1 5.1739 3.4244 -1.2844 9 6 6.5326 1.7781 -1.2770 10 7 7.6034 2.5403 -1.2318 11 14 6.7114 -0.0791 -1.3677 12 1 6.6423 -0.5144 -2.7858 13 1 5.6144 -0.7201 -0.5991 14 1 8.0198 -0.4792 -0.7903 15 6 2.9176 2.0869 -1.9963 16 6 2.8841 2.6531 -3.2535 17 6 1.6970 3.1528 -3.7572 18 6 0.5431 3.0842 -2.9978 19 6 0.5709 2.5173 -1.7409 20 6 1.7627 2.0082 -1.2275 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5137 0.8899 26 1 3.8147 0.5360 0.7595 27 1 3.7528 2.3296 0.7895 28 1 8.4859 2.1382 -1.2450 29 1 3.7859 2.7059 -3.8454 30 1 1.6712 3.5964 -4.7416 31 1 -0.3833 3.4767 -3.3905 32 1 -0.3335 2.4672 -1.1528 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:01 Heat of formation + Delta-G solvation = 17.794260 kcal Electronic energy + Delta-G solvation = -14591.516079 eV Core-core repulsion = 12323.108977 eV Total energy + Delta-G solvation = -2268.407103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.64637 -37.67784 -35.47541 -33.68733 -31.47564 -30.04926 -29.87999 -26.08889 -23.88555 -23.75803 -21.50106 -21.47505 -19.20523 -17.53730 -16.73381 -16.32205 -16.29190 -15.61298 -15.25517 -15.02186 -14.73994 -14.19118 -13.67134 -13.33344 -13.05220 -13.00238 -12.91924 -12.58944 -12.52560 -12.16571 -11.92807 -11.87765 -11.38846 -11.33787 -10.84672 -10.24492 -9.55370 -8.74959 -8.35036 -6.38645 0.52879 0.62233 1.29065 1.30021 1.40640 2.27734 2.82309 2.96843 2.97971 3.96160 4.06739 4.20360 4.26830 4.29068 4.32461 4.53242 4.58683 4.66855 4.75879 4.80578 4.92593 4.95671 5.08386 5.15944 5.33515 5.35194 5.50977 5.58846 5.67550 5.83770 5.91413 6.14857 6.26051 6.49412 6.64370 7.24292 8.81699 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.011557 C = 0.009232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.655794 B = 2422.231455 C = 3032.129583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.498 5.498 4 C 0.054 3.946 5 C 0.019 3.981 6 H 0.045 0.955 7 C -0.501 4.501 8 H 0.027 0.973 9 C 0.016 3.984 10 N -0.944 5.944 11 Si 0.944 3.056 12 H -0.269 1.269 13 H -0.248 1.248 14 H -0.281 1.281 15 C -0.136 4.136 16 C -0.109 4.109 17 C -0.136 4.136 18 C -0.112 4.112 19 C -0.117 4.117 20 C 0.066 3.934 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.023 0.977 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.268 0.732 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -5.578 -1.143 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.216 5.216 4 C -0.073 4.073 5 C -0.001 4.001 6 H 0.063 0.937 7 C -0.539 4.539 8 H 0.046 0.954 9 C -0.181 4.181 10 N -0.583 5.583 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.172 1.172 14 H -0.207 1.207 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.154 4.154 18 C -0.130 4.130 19 C -0.137 4.137 20 C -0.030 4.030 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.164 0.836 31 H 0.179 0.821 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.275 -5.367 -0.661 16.204 hybrid contribution 1.587 -0.713 -0.596 1.839 sum -13.688 -6.080 -1.257 15.031 Atomic orbital electron populations 1.21850 0.92591 1.02826 1.02793 1.22314 0.98086 0.86686 1.00792 1.60450 1.15430 1.16747 1.28933 1.23336 0.84508 1.01636 0.97807 1.19317 0.92757 0.95497 0.92545 0.93724 1.20824 0.89841 0.92772 1.50506 0.95428 1.25938 0.95192 1.03097 0.93908 1.70035 0.98712 1.37803 1.51773 0.85780 0.78062 0.80051 0.79343 1.19448 1.17158 1.20696 1.21544 0.96659 1.00491 0.95176 1.20607 0.98559 0.98676 0.94950 1.21329 0.91895 1.01003 1.01173 1.21239 0.99097 0.99125 0.93524 1.20777 0.95936 1.00152 0.96810 1.19876 0.94540 0.99028 0.89551 0.92308 0.90259 0.91522 0.95890 0.89588 0.90307 0.91387 0.92266 0.88045 0.83601 0.82139 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.77 71.98 0.70 -2.57 16 2 C 0.05 1.40 5.47 86.30 0.47 1.87 16 3 N -0.50 -18.57 5.06 -688.62 -3.48 -22.06 16 4 C 0.05 2.34 6.52 86.66 0.57 2.91 16 5 C 0.02 0.90 2.67 -11.46 -0.03 0.87 16 6 H 0.04 2.16 5.23 -2.39 -0.01 2.15 16 7 C -0.50 -29.14 8.76 25.60 0.22 -28.91 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 9 C 0.02 0.96 5.47 84.65 0.46 1.42 16 10 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 11 Si 0.94 44.01 27.03 68.60 1.85 45.86 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.25 -10.62 6.76 99.48 0.67 -9.95 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 C -0.14 -6.06 5.65 -19.48 -0.11 -6.17 16 16 C -0.11 -4.47 9.88 22.21 0.22 -4.25 16 17 C -0.14 -4.25 10.06 22.30 0.22 -4.03 16 18 C -0.11 -3.04 10.02 22.21 0.22 -2.82 16 19 C -0.12 -3.59 8.53 22.47 0.19 -3.40 16 20 C 0.07 2.53 5.29 38.28 0.20 2.73 16 21 H 0.06 1.37 5.56 -2.39 -0.01 1.35 16 22 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16 24 H 0.02 0.74 8.06 -2.39 -0.02 0.72 16 25 H 0.09 2.34 7.85 -2.39 -0.02 2.32 16 26 H 0.08 3.10 7.60 -2.38 -0.02 3.09 16 27 H 0.07 3.18 7.91 -2.39 -0.02 3.16 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.14 3.55 7.16 -2.91 -0.02 3.53 16 Total: -1.00 -67.10 261.30 3.08 -64.02 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.06 Total: 13.09 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 3.35 Total: -42.35 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.18 Total: -80.62 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.85 Total: 45.86 kcal Total: -67.10 3.08 -64.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.815 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds