Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48502 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46983 * 299.99630 * 3 2 1 6 6 H 1.48495 * 109.47133 * 60.00000 * 3 2 1 7 7 C 1.37876 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47271 * 179.97438 * 9 7 2 11 11 N 1.30950 * 125.32063 * 269.99894 * 10 9 7 12 12 C 1.33379 * 109.83971 * 180.02562 * 11 10 9 13 13 C 1.37927 * 107.45943 * 359.97438 * 12 11 10 14 14 C 1.41359 * 133.70696 * 180.02562 * 13 12 11 15 15 O 1.35845 * 120.45337 * 359.95580 * 14 13 12 16 16 C 1.36392 * 119.09397 * 179.97438 * 14 13 12 17 17 C 1.40753 * 119.71739 * 359.77370 * 16 14 13 18 18 C 1.34650 * 120.67179 * 0.49002 * 17 16 14 19 19 N 1.34990 * 125.31965 * 89.99946 * 10 9 7 20 20 H 0.96998 * 120.00033 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46908 * 59.99923 * 9 7 2 22 22 H 1.08998 * 109.46818 * 300.00262 * 9 7 2 23 23 H 1.08010 * 126.26612 * 179.97438 * 12 11 10 24 24 H 0.96706 * 113.99825 * 89.99974 * 15 14 13 25 25 H 1.08003 * 120.14181 * 180.02562 * 16 14 13 26 26 H 1.08003 * 119.66385 * 180.27337 * 17 16 14 27 27 H 1.08002 * 119.67990 * 179.76954 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.7222 -4.2201 -1.0679 12 6 3.5570 -5.1975 -0.7119 13 6 3.5881 -5.2335 0.6665 14 6 4.2738 -6.0353 1.6074 15 8 5.1134 -7.0190 1.1917 16 6 4.0805 -5.8080 2.9383 17 6 3.2104 -4.7818 3.3518 18 6 2.5586 -4.0277 2.4466 19 7 2.7374 -4.2378 1.1020 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 4.1078 -5.8425 -1.3806 24 1 6.0283 -6.7301 1.0707 25 1 4.5961 -6.4103 3.6718 26 1 3.0614 -4.5997 4.4059 27 1 1.8918 -3.2469 2.7817 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260615768.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = 36.417117 kcal Electronic energy + Delta-G solvation = -13973.534784 eV Core-core repulsion = 11504.676224 eV Total energy + Delta-G solvation = -2468.858560 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.21213 -38.23269 -36.24055 -33.45092 -31.96659 -30.54668 -28.95546 -26.56339 -23.57426 -23.06555 -21.81813 -20.37584 -17.95197 -16.95547 -16.56771 -16.15873 -15.42585 -15.14539 -14.59675 -14.45279 -13.72186 -12.70175 -12.59131 -12.28892 -11.77483 -11.55298 -11.38193 -10.93876 -10.78914 -10.71758 -10.08144 -9.95348 -9.53392 -9.52766 -8.68855 -8.55170 -6.86474 -6.14866 -4.21046 1.07027 1.72767 3.13089 3.24117 3.32071 3.37149 3.63733 3.77415 4.27913 4.37105 4.93166 5.04188 5.17881 5.23790 5.33372 5.47595 5.90219 6.03036 6.14066 6.34261 6.42910 6.88227 6.99184 7.27393 7.39371 7.63969 7.78097 7.78802 8.13127 8.65990 8.81408 9.43501 10.93464 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.007888 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.723071 B = 3549.008756 C = 3762.069576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.095 3.905 10 C 0.243 3.757 11 N -0.468 5.468 12 C -0.006 4.006 13 C -0.064 4.064 14 C 0.150 3.850 15 O -0.487 6.487 16 C -0.166 4.166 17 C -0.148 4.148 18 C 0.073 3.927 19 N -0.365 5.365 20 H 0.264 0.736 21 H 0.057 0.943 22 H 0.036 0.964 23 H 0.172 0.828 24 H 0.390 0.610 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.474 -8.894 6.577 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.056 3.944 10 C -0.014 4.014 11 N -0.181 5.181 12 C -0.160 4.160 13 C -0.171 4.171 14 C 0.104 3.896 15 O -0.296 6.296 16 C -0.187 4.187 17 C -0.169 4.169 18 C -0.047 4.047 19 N -0.038 5.038 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.189 0.811 24 H 0.246 0.754 25 H 0.150 0.850 26 H 0.162 0.838 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.548 -8.824 5.776 12.414 hybrid contribution 1.167 0.902 0.812 1.684 sum 7.716 -7.922 6.588 12.873 Atomic orbital electron populations 1.69947 1.06002 1.27118 1.49876 1.24958 0.94913 0.99310 0.94788 0.86401 0.80053 0.83062 0.77758 1.19715 1.20670 1.20848 1.20966 0.93105 0.89440 1.51920 0.92434 1.17929 0.90549 0.86189 0.99711 1.24738 1.00413 0.98205 0.77997 1.70162 1.11488 1.08503 1.27950 1.22494 1.02871 1.00456 0.90212 1.19669 1.03902 0.97826 0.95714 1.17219 0.93884 0.88801 0.89737 1.84773 1.22372 1.33243 1.89244 1.21117 1.02954 0.99941 0.94691 1.20472 0.99622 0.97231 0.99570 1.21797 1.01176 1.01052 0.80676 1.42856 1.30393 1.24147 1.06364 0.92590 0.92513 0.94574 0.81070 0.75426 0.84983 0.83754 0.81494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -14.27 9.09 -34.44 -0.31 -14.58 15 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 9 C 0.09 2.44 5.42 -29.03 -0.16 2.29 15 10 C 0.24 5.74 7.15 -155.09 -1.11 4.63 15 11 N -0.47 -10.97 11.20 -10.14 -0.11 -11.08 15 12 C -0.01 -0.11 12.01 -16.99 -0.20 -0.32 15 13 C -0.06 -1.22 6.76 -84.01 -0.57 -1.78 15 14 C 0.15 2.34 6.73 -39.06 -0.26 2.07 15 15 O -0.49 -6.24 13.52 -19.25 -0.26 -6.50 15 16 C -0.17 -2.27 10.01 -39.30 -0.39 -2.66 15 17 C -0.15 -2.03 9.96 -39.90 -0.40 -2.43 15 18 C 0.07 1.24 10.80 -16.39 -0.18 1.07 15 19 N -0.36 -7.48 2.95 -58.04 -0.17 -7.65 15 20 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 21 H 0.06 1.56 8.14 -51.93 -0.42 1.14 15 22 H 0.04 0.92 8.04 -51.93 -0.42 0.50 15 23 H 0.17 2.79 8.06 -52.48 -0.42 2.36 15 24 H 0.39 3.03 9.06 45.56 0.41 3.44 15 25 H 0.13 1.42 8.06 -52.48 -0.42 1.00 15 26 H 0.14 1.46 8.06 -52.48 -0.42 1.03 15 27 H 0.17 2.66 7.98 -52.49 -0.42 2.24 15 LS Contribution 248.66 15.07 3.75 3.75 Total: -1.00 -32.23 248.66 -6.42 -38.65 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -1.66 Total: 1.46 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.68 Total: -10.07 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.45 Total: -43.42 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.26 Total: -6.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.23 -6.42 -38.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260615768.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.064 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds