Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48502 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46983 * 299.99630 * 3 2 1 6 6 H 1.48495 * 109.47133 * 60.00000 * 3 2 1 7 7 C 1.37876 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47271 * 179.97438 * 9 7 2 11 11 N 1.30950 * 125.32063 * 269.99894 * 10 9 7 12 12 C 1.33379 * 109.83971 * 180.02562 * 11 10 9 13 13 C 1.37927 * 107.45943 * 359.97438 * 12 11 10 14 14 C 1.41359 * 133.70696 * 180.02562 * 13 12 11 15 15 O 1.35845 * 120.45337 * 359.95580 * 14 13 12 16 16 C 1.36392 * 119.09397 * 179.97438 * 14 13 12 17 17 C 1.40753 * 119.71739 * 359.77370 * 16 14 13 18 18 C 1.34650 * 120.67179 * 0.49002 * 17 16 14 19 19 N 1.34990 * 125.31965 * 89.99946 * 10 9 7 20 20 H 0.96998 * 120.00033 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46908 * 59.99923 * 9 7 2 22 22 H 1.08998 * 109.46818 * 300.00262 * 9 7 2 23 23 H 1.08010 * 126.26612 * 179.97438 * 12 11 10 24 24 H 0.96706 * 113.99825 * 89.99974 * 15 14 13 25 25 H 1.08003 * 120.14181 * 180.02562 * 16 14 13 26 26 H 1.08003 * 119.66385 * 180.27337 * 17 16 14 27 27 H 1.08002 * 119.67990 * 179.76954 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.7222 -4.2201 -1.0679 12 6 3.5570 -5.1975 -0.7119 13 6 3.5881 -5.2335 0.6665 14 6 4.2738 -6.0353 1.6074 15 8 5.1134 -7.0190 1.1917 16 6 4.0805 -5.8080 2.9383 17 6 3.2104 -4.7818 3.3518 18 6 2.5586 -4.0277 2.4466 19 7 2.7374 -4.2378 1.1020 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 4.1078 -5.8425 -1.3806 24 1 6.0283 -6.7301 1.0707 25 1 4.5961 -6.4103 3.6718 26 1 3.0614 -4.5997 4.4059 27 1 1.8918 -3.2469 2.7817 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260615768.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = 14.077073 kcal Electronic energy + Delta-G solvation = -13974.503521 eV Core-core repulsion = 11504.676224 eV Total energy + Delta-G solvation = -2469.827297 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.69812 -39.39570 -37.50832 -35.49440 -33.41029 -32.22730 -30.49360 -28.17580 -25.44833 -24.44525 -23.25822 -21.86401 -19.22242 -18.67528 -18.24591 -17.52712 -16.82656 -16.65985 -16.34044 -15.74889 -15.04416 -14.47147 -14.19291 -13.83568 -13.55563 -13.00827 -12.92380 -12.69066 -12.61877 -12.09997 -11.86823 -11.65982 -11.23567 -11.12008 -10.67456 -10.15618 -8.41985 -8.12351 -6.40861 -0.15867 0.34869 1.37850 1.39932 1.52296 1.71573 2.12076 2.37936 2.41630 3.04615 3.16618 3.65834 3.72222 3.96299 3.99003 4.09081 4.54357 4.75555 4.90542 5.06952 5.12148 5.19364 5.30667 5.60836 5.63835 5.72094 5.98886 6.30740 6.65607 6.75205 7.06785 7.27969 8.82919 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.007888 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.723071 B = 3549.008756 C = 3762.069576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.044 0.956 9 C 0.111 3.889 10 C 0.191 3.809 11 N -0.497 5.497 12 C -0.034 4.034 13 C -0.057 4.057 14 C 0.143 3.857 15 O -0.485 6.485 16 C -0.147 4.147 17 C -0.110 4.110 18 C 0.021 3.979 19 N -0.361 5.361 20 H 0.270 0.730 21 H 0.022 0.978 22 H 0.027 0.973 23 H 0.199 0.801 24 H 0.414 0.586 25 H 0.177 0.823 26 H 0.192 0.808 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.563 -9.782 8.951 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.063 0.937 9 C 0.072 3.928 10 C -0.066 4.066 11 N -0.212 5.212 12 C -0.188 4.188 13 C -0.166 4.166 14 C 0.096 3.904 15 O -0.297 6.297 16 C -0.168 4.168 17 C -0.130 4.130 18 C -0.098 4.098 19 N -0.032 5.032 20 H 0.079 0.921 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.216 0.784 24 H 0.274 0.726 25 H 0.194 0.806 26 H 0.209 0.791 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.644 -9.709 8.166 15.351 hybrid contribution 0.627 0.984 0.228 1.189 sum 9.271 -8.725 8.393 15.248 Atomic orbital electron populations 1.70048 1.07437 1.28339 1.50292 1.25813 0.95780 1.02784 0.94024 0.85343 0.78491 0.78535 0.78325 1.19665 1.20122 1.19275 1.21134 0.92569 0.90851 1.52403 0.93727 1.17468 0.90645 0.87207 0.97480 1.23930 1.03112 0.99951 0.79587 1.69986 1.12517 1.09743 1.28947 1.22955 1.03574 1.00782 0.91529 1.20295 1.02890 0.97260 0.96176 1.17319 0.94438 0.88837 0.89786 1.84738 1.23769 1.32162 1.89066 1.21671 1.01421 0.99075 0.94620 1.21116 0.96206 0.94666 1.01043 1.22220 1.04106 1.03624 0.79873 1.42850 1.29760 1.23651 1.06988 0.92102 0.95976 0.95514 0.78385 0.72635 0.80556 0.79104 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 13.29 21.45 0.28 -53.84 15 2 C 0.02 0.88 5.46 84.65 0.46 1.34 15 3 Si 0.97 43.93 29.54 68.60 2.03 45.96 15 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 7 C -0.53 -30.75 9.09 25.60 0.23 -30.52 15 8 H 0.04 2.63 7.74 -2.91 -0.02 2.61 15 9 C 0.11 6.12 5.42 29.10 0.16 6.28 15 10 C 0.19 9.49 7.15 138.01 0.99 10.48 15 11 N -0.50 -24.50 11.20 -185.98 -2.08 -26.58 15 12 C -0.03 -1.37 12.01 84.38 1.01 -0.36 15 13 C -0.06 -2.12 6.76 38.86 0.26 -1.86 15 14 C 0.14 3.95 6.73 22.61 0.15 4.10 15 15 O -0.49 -10.42 13.52 -91.80 -1.24 -11.66 15 16 C -0.15 -3.22 10.01 22.45 0.22 -3.00 15 17 C -0.11 -2.54 9.96 22.06 0.22 -2.32 15 18 C 0.02 0.69 10.80 83.02 0.90 1.58 15 19 N -0.36 -14.99 2.95 -337.55 -0.99 -15.98 15 20 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 21 H 0.02 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.03 1.47 8.04 -2.39 -0.02 1.45 15 23 H 0.20 6.38 8.06 -2.91 -0.02 6.36 15 24 H 0.41 4.63 9.06 -74.05 -0.67 3.96 15 25 H 0.18 2.44 8.06 -2.91 -0.02 2.42 15 26 H 0.19 2.66 8.06 -2.91 -0.02 2.63 15 27 H 0.17 5.35 7.98 -2.91 -0.02 5.32 15 Total: -1.00 -73.24 248.66 3.13 -70.11 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.52 Total: 6.26 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.61 Total: -14.28 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -2.79 Total: -96.40 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.24 Total: -11.66 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.24 3.13 -70.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260615768.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.191 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds