Wall clock time and date at job start Mon Mar 30 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47000 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47011 * 29.99871 * 3 2 1 6 6 H 1.48498 * 109.46965 * 150.00087 * 3 2 1 7 7 C 1.37881 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00093 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99986 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47179 * 180.02562 * 9 7 2 11 11 N 1.30963 * 125.30876 * 89.97469 * 10 9 7 12 12 C 1.33359 * 109.84938 * 180.02562 * 11 10 9 13 13 C 1.38099 * 107.44108 * 359.97438 * 12 11 10 14 14 C 1.40955 * 133.62560 * 180.02562 * 13 12 11 15 15 C 1.35818 * 119.27991 * 180.02562 * 14 13 12 16 16 C 1.41131 * 119.75971 * 359.97438 * 15 14 13 17 17 O 1.36026 * 119.75198 * 179.97438 * 16 15 14 18 18 C 1.35104 * 120.50199 * 359.97438 * 16 15 14 19 19 N 1.34983 * 125.31181 * 270.00164 * 10 9 7 20 20 H 0.97004 * 119.99557 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47268 * 60.00109 * 9 7 2 22 22 H 1.09004 * 109.47218 * 300.00195 * 9 7 2 23 23 H 1.07999 * 126.27837 * 179.97438 * 12 11 10 24 24 H 1.08002 * 120.36194 * 359.72015 * 14 13 12 25 25 H 1.07991 * 120.12024 * 179.97438 * 15 14 13 26 26 H 0.96703 * 113.99742 * 270.01961 * 17 16 15 27 27 H 1.07997 * 119.76630 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0010 11 7 4.2660 -3.3286 -1.0678 12 6 4.6938 -4.5407 -0.7124 13 6 4.7100 -4.5857 0.6677 14 6 5.0612 -5.5789 1.6043 15 6 4.9640 -5.3049 2.9310 16 6 4.5153 -4.0351 3.3531 17 8 4.4175 -3.7611 4.6818 18 6 4.1821 -3.0896 2.4473 19 7 4.2733 -3.3509 1.1024 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6802 0.8911 22 1 3.8752 -0.6805 -0.8889 23 1 4.9760 -5.3403 -1.3813 24 1 5.3992 -6.5488 1.2706 25 1 5.2292 -6.0559 3.6603 26 1 3.5563 -3.9763 5.0655 27 1 3.8405 -2.1218 2.7835 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260616851.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:38 Heat of formation + Delta-G solvation = 41.036188 kcal Electronic energy + Delta-G solvation = -13986.185252 eV Core-core repulsion = 11517.526990 eV Total energy + Delta-G solvation = -2468.658262 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.28566 -38.57824 -35.57643 -33.60420 -32.72991 -30.51381 -29.11875 -26.79444 -23.59501 -22.87346 -21.85658 -20.28709 -18.15797 -17.07536 -16.97276 -16.21797 -15.52498 -14.93245 -14.67735 -14.31328 -13.76807 -13.04943 -12.69025 -12.46378 -12.14836 -11.90950 -11.33360 -10.80799 -10.66869 -10.58544 -10.40085 -10.06165 -9.62775 -9.50886 -8.68900 -8.63366 -6.92898 -6.17258 -4.18685 1.04949 1.56527 2.99773 3.23930 3.31135 3.31842 3.58338 3.71514 4.28800 4.32010 4.79029 4.97867 5.09064 5.17736 5.26635 5.39674 5.71518 5.91070 6.09985 6.21619 6.34740 6.69240 6.83212 6.86153 7.13343 7.43815 7.53436 7.76198 8.36300 8.55418 8.85336 9.40051 10.95350 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.009214 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.026741 B = 3037.991763 C = 3550.475647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.062 3.938 10 C 0.244 3.756 11 N -0.462 5.462 12 C -0.011 4.011 13 C -0.045 4.045 14 C -0.052 4.052 15 C -0.160 4.160 16 C 0.071 3.929 17 O -0.489 6.489 18 C 0.048 3.952 19 N -0.360 5.360 20 H 0.267 0.733 21 H 0.033 0.967 22 H 0.051 0.949 23 H 0.175 0.825 24 H 0.143 0.857 25 H 0.134 0.866 26 H 0.389 0.611 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -8.465 6.753 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.092 0.908 9 C 0.023 3.977 10 C -0.013 4.013 11 N -0.175 5.175 12 C -0.166 4.166 13 C -0.151 4.151 14 C -0.072 4.072 15 C -0.181 4.181 16 C 0.024 3.976 17 O -0.297 6.297 18 C -0.073 4.073 19 N -0.032 5.032 20 H 0.077 0.923 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.192 0.808 24 H 0.161 0.839 25 H 0.152 0.848 26 H 0.245 0.755 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.410 -7.747 5.897 13.540 hybrid contribution -0.166 0.354 0.946 1.024 sum 9.245 -7.392 6.843 13.673 Atomic orbital electron populations 1.69885 1.06249 1.27219 1.49790 1.24923 0.94781 0.98941 0.94159 0.86823 0.80237 0.83536 0.79066 1.19674 1.20983 1.18965 1.20787 0.87605 0.94959 1.52409 0.90835 1.18321 0.97723 0.82973 0.98649 1.24017 1.01517 0.97621 0.78159 1.70120 1.15949 1.03824 1.27602 1.22560 1.07205 0.96662 0.90205 1.19595 1.11983 0.87849 0.95690 1.20262 0.98214 0.97652 0.91102 1.21140 1.04308 0.96534 0.96109 1.17453 1.04023 0.92658 0.83487 1.84883 1.39097 1.87263 1.18442 1.21806 1.02316 1.02069 0.81129 1.42648 1.42855 1.12199 1.05548 0.92341 0.94880 0.93053 0.80784 0.83892 0.84825 0.75541 0.81435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.12 15 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 15 3 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 15 7 C -0.52 -14.67 9.65 -34.44 -0.33 -15.01 15 8 H 0.07 2.32 7.98 -52.49 -0.42 1.90 15 9 C 0.06 1.51 4.49 -29.04 -0.13 1.38 15 10 C 0.24 5.59 7.15 -155.08 -1.11 4.48 15 11 N -0.46 -10.41 11.20 -10.10 -0.11 -10.52 15 12 C -0.01 -0.21 12.02 -16.94 -0.20 -0.42 15 13 C -0.04 -0.80 6.80 -84.11 -0.57 -1.37 15 14 C -0.05 -0.72 10.10 -39.42 -0.40 -1.12 15 15 C -0.16 -2.10 10.01 -39.35 -0.39 -2.50 15 16 C 0.07 1.05 6.65 -39.60 -0.26 0.79 15 17 O -0.49 -6.08 13.49 -19.82 -0.27 -6.35 15 18 C 0.05 0.84 10.72 -16.21 -0.17 0.67 15 19 N -0.36 -7.23 2.95 -57.99 -0.17 -7.40 15 20 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 21 H 0.03 0.76 7.09 -51.93 -0.37 0.39 15 22 H 0.05 1.24 7.57 -51.93 -0.39 0.85 15 23 H 0.18 2.49 8.06 -52.49 -0.42 2.06 15 24 H 0.14 1.43 8.06 -52.49 -0.42 1.00 15 25 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.39 3.03 9.07 45.56 0.41 3.44 15 27 H 0.17 2.84 7.98 -52.49 -0.42 2.43 15 LS Contribution 245.04 15.07 3.69 3.69 Total: -1.00 -33.26 245.04 -6.05 -39.31 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -1.62 Total: 2.36 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.67 Total: -11.06 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.49 Total: -44.05 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.27 Total: -6.35 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.26 -6.05 -39.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616851.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.349 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds