Wall clock time and date at job start Mon Mar 30 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47000 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47011 * 29.99871 * 3 2 1 6 6 H 1.48498 * 109.46965 * 150.00087 * 3 2 1 7 7 C 1.37881 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00093 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99986 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47179 * 180.02562 * 9 7 2 11 11 N 1.30963 * 125.30876 * 89.97469 * 10 9 7 12 12 C 1.33359 * 109.84938 * 180.02562 * 11 10 9 13 13 C 1.38099 * 107.44108 * 359.97438 * 12 11 10 14 14 C 1.40955 * 133.62560 * 180.02562 * 13 12 11 15 15 C 1.35818 * 119.27991 * 180.02562 * 14 13 12 16 16 C 1.41131 * 119.75971 * 359.97438 * 15 14 13 17 17 O 1.36026 * 119.75198 * 179.97438 * 16 15 14 18 18 C 1.35104 * 120.50199 * 359.97438 * 16 15 14 19 19 N 1.34983 * 125.31181 * 270.00164 * 10 9 7 20 20 H 0.97004 * 119.99557 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47268 * 60.00109 * 9 7 2 22 22 H 1.09004 * 109.47218 * 300.00195 * 9 7 2 23 23 H 1.07999 * 126.27837 * 179.97438 * 12 11 10 24 24 H 1.08002 * 120.36194 * 359.72015 * 14 13 12 25 25 H 1.07991 * 120.12024 * 179.97438 * 15 14 13 26 26 H 0.96703 * 113.99742 * 270.01961 * 17 16 15 27 27 H 1.07997 * 119.76630 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0010 11 7 4.2660 -3.3286 -1.0678 12 6 4.6938 -4.5407 -0.7124 13 6 4.7100 -4.5857 0.6677 14 6 5.0612 -5.5789 1.6043 15 6 4.9640 -5.3049 2.9310 16 6 4.5153 -4.0351 3.3531 17 8 4.4175 -3.7611 4.6818 18 6 4.1821 -3.0896 2.4473 19 7 4.2733 -3.3509 1.1024 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6802 0.8911 22 1 3.8752 -0.6805 -0.8889 23 1 4.9760 -5.3403 -1.3813 24 1 5.3992 -6.5488 1.2706 25 1 5.2292 -6.0559 3.6603 26 1 3.5563 -3.9763 5.0655 27 1 3.8405 -2.1218 2.7835 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616851.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:38 Heat of formation + Delta-G solvation = 16.734232 kcal Electronic energy + Delta-G solvation = -13987.239064 eV Core-core repulsion = 11517.526990 eV Total energy + Delta-G solvation = -2469.712074 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.69986 -39.74983 -36.82333 -35.48489 -34.29357 -32.31075 -30.50969 -28.33297 -25.21046 -24.40036 -23.23073 -21.78955 -19.34064 -19.12348 -18.47440 -17.43831 -16.90296 -16.38422 -16.21317 -15.86156 -15.15052 -14.77558 -14.12405 -13.88718 -13.83013 -13.47624 -12.88517 -12.56868 -12.39615 -11.98527 -11.80146 -11.74801 -11.52692 -11.13700 -10.85851 -10.00561 -8.38025 -8.28876 -6.44562 -0.15841 0.26841 1.35478 1.37391 1.47876 1.64525 2.11048 2.30517 2.41990 2.96751 3.15660 3.58390 3.68151 3.92101 4.01126 4.03973 4.49976 4.64319 4.73309 4.85475 5.06955 5.12419 5.18279 5.39315 5.61312 5.74637 6.07083 6.23082 6.58143 6.71445 7.05073 7.18540 8.80136 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.009214 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.026741 B = 3037.991763 C = 3550.475647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.243 1.243 7 C -0.525 4.525 8 H 0.020 0.980 9 C 0.074 3.926 10 C 0.186 3.814 11 N -0.493 5.493 12 C -0.031 4.031 13 C -0.042 4.042 14 C -0.046 4.046 15 C -0.150 4.150 16 C 0.106 3.894 17 O -0.490 6.490 18 C -0.010 4.010 19 N -0.358 5.358 20 H 0.271 0.729 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.212 0.788 24 H 0.191 0.809 25 H 0.178 0.822 26 H 0.415 0.585 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 -9.786 8.462 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.167 1.167 7 C -0.564 4.564 8 H 0.038 0.962 9 C 0.035 3.965 10 C -0.070 4.070 11 N -0.207 5.207 12 C -0.186 4.186 13 C -0.150 4.150 14 C -0.066 4.066 15 C -0.171 4.171 16 C 0.059 3.941 17 O -0.302 6.302 18 C -0.130 4.130 19 N -0.030 5.030 20 H 0.080 0.920 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.228 0.772 24 H 0.208 0.792 25 H 0.195 0.805 26 H 0.275 0.725 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.560 -9.070 7.641 16.562 hybrid contribution -0.848 0.519 0.604 1.163 sum 10.712 -8.551 8.246 15.996 Atomic orbital electron populations 1.70038 1.08321 1.28645 1.51225 1.25917 0.95657 1.03271 0.93324 0.85639 0.79524 0.77787 0.79652 1.18923 1.20081 1.16677 1.20903 0.89993 0.93071 1.52428 0.96185 1.18007 0.94699 0.85085 0.98732 1.23470 1.06061 0.97839 0.79659 1.69976 1.16632 1.05674 1.28447 1.23202 1.07621 0.96289 0.91451 1.20312 1.10556 0.87774 0.96356 1.20849 0.96901 0.98288 0.90521 1.21633 1.02380 0.96239 0.96827 1.17687 1.00327 0.92278 0.83856 1.84812 1.40990 1.87474 1.16932 1.22001 1.06670 1.03458 0.80889 1.42647 1.41946 1.12590 1.05831 0.91957 0.93769 0.93355 0.77178 0.79183 0.80465 0.72537 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.96 21.45 0.30 -58.75 15 2 C 0.02 0.97 5.47 84.66 0.46 1.43 15 3 Si 0.95 43.51 27.47 68.60 1.88 45.39 15 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 15 7 C -0.53 -31.40 9.65 25.60 0.25 -31.15 15 8 H 0.02 1.36 7.98 -2.91 -0.02 1.33 15 9 C 0.07 3.73 4.49 29.10 0.13 3.86 15 10 C 0.19 8.85 7.15 138.01 0.99 9.83 15 11 N -0.49 -22.90 11.20 -185.86 -2.08 -24.98 15 12 C -0.03 -1.12 12.02 84.43 1.01 -0.11 15 13 C -0.04 -1.44 6.80 38.80 0.26 -1.17 15 14 C -0.05 -1.07 10.10 22.37 0.23 -0.84 15 15 C -0.15 -3.19 10.01 22.42 0.22 -2.97 15 16 C 0.11 2.83 6.65 22.26 0.15 2.97 15 17 O -0.49 -10.46 13.49 -93.85 -1.27 -11.73 15 18 C -0.01 -0.34 10.72 83.11 0.89 0.55 15 19 N -0.36 -14.54 2.95 -337.37 -0.99 -15.53 15 20 H 0.27 15.66 8.31 -92.71 -0.77 14.89 15 21 H 0.04 2.08 7.09 -2.39 -0.02 2.06 15 22 H 0.05 2.41 7.57 -2.38 -0.02 2.39 15 23 H 0.21 5.60 8.06 -2.91 -0.02 5.57 15 24 H 0.19 2.58 8.06 -2.91 -0.02 2.56 15 25 H 0.18 2.34 8.06 -2.92 -0.02 2.32 15 26 H 0.41 4.90 9.07 -74.06 -0.67 4.23 15 27 H 0.16 5.57 7.98 -2.91 -0.02 5.55 15 Total: -1.00 -77.18 245.04 2.91 -74.27 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.47 Total: 8.92 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 4.60 Total: -17.59 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -2.78 Total: -99.26 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.27 Total: -11.73 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -77.18 2.91 -74.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616851.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.002 kcal (2) G-P(sol) polarization free energy of solvation -77.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds