Wall clock time and date at job start Mon Mar 30 2020 02:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46946 * 2 1 4 4 C 1.47890 * 111.00200 * 50.04512 * 3 2 1 5 5 C 1.54564 * 102.68991 * 149.35310 * 4 3 2 6 6 C 1.51665 * 102.87885 * 334.36789 * 5 4 3 7 7 C 1.38393 * 131.28539 * 196.15466 * 6 5 4 8 8 C 1.37643 * 120.41054 * 179.08180 * 7 6 5 9 9 C 1.40790 * 119.63492 * 0.45405 * 8 7 6 10 10 C 1.41408 * 120.13128 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00049 * 154.90382 * 10 9 8 12 12 C 1.39928 * 119.99920 * 334.89764 * 10 9 8 13 13 N 1.30832 * 120.00189 * 342.36577 * 12 10 9 14 14 Si 1.86797 * 120.00040 * 162.36433 * 12 10 9 15 15 H 1.48497 * 109.47049 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47403 * 119.99970 * 14 12 10 17 17 H 1.48503 * 109.47061 * 240.00205 * 14 12 10 18 18 C 1.40378 * 119.73462 * 359.74029 * 9 8 7 19 19 C 1.38800 * 119.99548 * 0.15475 * 18 9 8 20 20 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47231 * 299.99749 * 1 2 3 22 22 H 1.08994 * 109.47621 * 60.00197 * 1 2 3 23 23 H 1.09001 * 109.47231 * 240.00251 * 2 1 3 24 24 H 1.09002 * 109.47299 * 119.99756 * 2 1 3 25 25 H 1.08996 * 110.76800 * 31.04852 * 4 3 2 26 26 H 1.09005 * 110.92781 * 267.72518 * 4 3 2 27 27 H 1.08999 * 110.73697 * 216.02319 * 5 4 3 28 28 H 1.08999 * 110.73735 * 92.71537 * 5 4 3 29 29 H 1.08003 * 119.79024 * 359.34305 * 7 6 5 30 30 H 1.07997 * 120.18611 * 180.19696 * 8 7 6 31 31 H 0.97006 * 120.00340 * 180.02562 * 13 12 10 32 32 H 1.07997 * 120.00591 * 180.18124 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3604 2.1802 1.0583 5 6 2.4497 3.2088 1.4385 6 6 3.7341 2.4962 1.0606 7 6 5.0510 2.7423 1.4076 8 6 6.0580 1.9274 0.9425 9 6 5.7436 0.8432 0.1011 10 6 6.7699 -0.0011 -0.3822 11 1 6.5434 -1.0180 -0.6666 12 6 8.0788 0.4812 -0.4923 13 7 8.3038 1.7700 -0.4870 14 14 9.5051 -0.7152 -0.6466 15 1 8.9880 -2.1071 -0.6266 16 1 10.2202 -0.4707 -1.9249 17 1 10.4409 -0.5189 0.4896 18 6 4.4067 0.6001 -0.2511 19 6 3.4014 1.4291 0.2271 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.1068 1.5522 1.9123 26 1 0.4729 2.6820 0.6726 27 1 2.4255 3.4192 2.5077 28 1 2.3330 4.1258 0.8611 29 1 5.2895 3.5766 2.0507 30 1 7.0841 2.1209 1.2182 31 1 9.2111 2.1044 -0.5637 32 1 4.1603 -0.2320 -0.8939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260702281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:45 Heat of formation + Delta-G solvation = 4.774388 kcal Electronic energy + Delta-G solvation = -14256.722536 eV Core-core repulsion = 11987.750849 eV Total energy + Delta-G solvation = -2268.971687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14723 -37.85623 -35.33918 -33.73589 -31.66423 -30.37650 -28.69505 -26.74909 -24.07690 -23.15386 -21.88492 -20.99444 -19.02932 -17.13551 -16.91843 -16.62625 -16.24602 -15.58693 -15.11820 -14.65881 -14.26098 -14.00875 -13.52125 -13.17558 -13.01174 -12.86315 -12.75253 -12.52900 -12.41113 -12.23012 -12.06358 -11.92545 -11.71458 -11.22160 -10.99803 -10.38371 -9.33259 -8.65467 -8.35630 -6.35777 0.93830 1.06219 1.37464 1.49219 1.53316 2.20611 2.66455 3.04616 3.67326 3.92228 3.98278 4.20017 4.26209 4.39335 4.50350 4.57184 4.77230 4.82426 4.91695 5.02343 5.05061 5.11331 5.16786 5.19221 5.25204 5.31211 5.48017 5.85641 5.92900 6.03544 6.16047 6.40607 6.45391 6.71533 6.93593 7.04516 8.33345 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044489 B = 0.007942 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.217774 B = 3524.707082 C = 4057.115916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 N -0.489 5.489 4 C 0.052 3.948 5 C -0.062 4.062 6 C -0.269 4.269 7 C -0.075 4.075 8 C -0.205 4.205 9 C 0.099 3.901 10 C -0.502 4.502 11 H 0.073 0.927 12 C 0.036 3.964 13 N -0.825 5.825 14 Si 0.984 3.016 15 H -0.259 1.259 16 H -0.264 1.264 17 H -0.262 1.262 18 C -0.256 4.256 19 C 0.105 3.895 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.289 0.711 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -0.956 3.125 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 N -0.205 5.205 4 C -0.073 4.073 5 C -0.099 4.099 6 C -0.272 4.272 7 C -0.094 4.094 8 C -0.225 4.225 9 C 0.097 3.903 10 C -0.531 4.531 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.451 5.451 14 Si 0.805 3.195 15 H -0.183 1.183 16 H -0.189 1.189 17 H -0.186 1.186 18 C -0.279 4.279 19 C 0.008 3.992 20 H 0.097 0.903 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.135 -0.590 2.592 9.514 hybrid contribution 1.226 -0.697 0.277 1.437 sum -7.909 -1.286 2.869 8.511 Atomic orbital electron populations 1.21835 0.91748 1.03222 1.03028 1.22263 0.97791 0.87803 1.00420 1.60775 1.01566 1.13034 1.45142 1.23254 0.97607 0.94421 0.92035 1.21052 0.90131 0.97491 1.01239 1.20409 0.95018 1.02841 1.08956 1.20235 0.91683 0.98287 0.99150 1.21178 0.98072 1.00083 1.03130 1.17673 0.91685 0.91980 0.88999 1.19803 0.93476 0.99250 1.40585 0.90915 1.26773 1.02574 0.97177 0.91345 1.69898 1.24056 1.15448 1.35737 0.85138 0.76617 0.78774 0.79020 1.18263 1.18915 1.18600 1.20375 0.92509 1.04442 1.10539 1.19480 0.89003 0.95754 0.94965 0.90326 0.91277 0.91647 0.91905 0.95395 0.91982 0.87149 0.90040 0.90926 0.87242 0.87769 0.90064 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.60 71.98 0.69 -2.47 16 2 C 0.04 1.42 5.31 86.30 0.46 1.87 16 3 N -0.49 -18.56 5.17 -688.84 -3.56 -22.12 16 4 C 0.05 1.57 5.37 86.65 0.47 2.03 16 5 C -0.06 -2.09 7.03 30.69 0.22 -1.87 16 6 C -0.27 -12.21 6.25 -19.23 -0.12 -12.33 16 7 C -0.07 -3.65 10.00 22.17 0.22 -3.43 16 8 C -0.20 -11.31 8.70 22.75 0.20 -11.11 16 9 C 0.10 5.69 5.56 -21.35 -0.12 5.57 16 10 C -0.50 -28.34 9.04 23.46 0.21 -28.13 16 11 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 12 C 0.04 1.88 5.14 85.25 0.44 2.32 16 13 N -0.83 -44.59 10.97 21.82 0.24 -44.35 16 14 Si 0.98 39.19 29.59 68.60 2.03 41.22 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 18 C -0.26 -13.63 9.28 22.93 0.21 -13.42 16 19 C 0.11 4.97 5.89 38.24 0.23 5.19 16 20 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.07 1.37 6.62 -2.39 -0.02 1.35 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 2.16 7.77 -2.39 -0.02 2.14 16 24 H 0.03 0.96 8.06 -2.39 -0.02 0.94 16 25 H 0.06 1.69 7.32 -2.39 -0.02 1.67 16 26 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.10 5.95 6.18 -2.91 -0.02 5.93 16 31 H 0.29 13.95 8.30 -92.70 -0.77 13.18 16 32 H 0.09 4.45 7.65 -2.91 -0.02 4.43 16 Total: -1.00 -63.45 262.83 2.90 -60.55 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 1.10 Total: 20.47 kcal Atomic # 6 Polarization: -58.88 SS G_CDS: 3.10 Total: -55.77 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -3.32 Total: -66.47 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -63.45 2.90 -60.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260702281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.322 kcal (2) G-P(sol) polarization free energy of solvation -63.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds