Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47155 * 239.99646 * 3 2 1 5 5 H 1.48495 * 109.47448 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47298 * 119.99833 * 3 2 1 7 7 C 1.37886 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99375 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46825 * 179.97438 * 9 7 2 11 11 C 1.38954 * 119.69310 * 269.98062 * 10 9 7 12 12 C 1.36593 * 120.80601 * 180.02562 * 11 10 9 13 13 C 1.39310 * 119.84824 * 359.95558 * 12 11 10 14 14 N 1.37038 * 133.80575 * 180.02562 * 13 12 11 15 15 H 0.97006 * 125.40855 * 0.04518 * 14 13 12 16 16 N 1.39857 * 109.17556 * 179.77930 * 14 13 12 17 17 C 1.30526 * 110.05151 * 0.42651 * 16 14 13 18 18 O 1.35932 * 126.15821 * 179.83829 * 17 16 14 19 19 C 1.40803 * 119.40155 * 0.06173 * 13 12 11 20 20 C 1.36496 * 119.68670 * 90.00922 * 10 9 7 21 21 H 0.96999 * 119.99714 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46471 * 59.99846 * 9 7 2 23 23 H 1.08993 * 109.47165 * 300.00532 * 9 7 2 24 24 H 1.07999 * 119.59621 * 0.02562 * 11 10 9 25 25 H 1.08001 * 120.08051 * 179.97438 * 12 11 10 26 26 H 0.96700 * 114.00406 * 269.69949 * 18 17 16 27 27 H 1.08006 * 120.17715 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2302 -3.6447 0.0015 11 6 2.6763 -4.1687 -1.2057 12 6 3.5633 -5.2070 -1.2325 13 6 4.0305 -5.7507 -0.0380 14 7 4.8992 -6.7660 0.2664 15 1 5.3691 -7.3163 -0.3796 16 7 5.0050 -6.8787 1.6564 17 6 4.2414 -5.9933 2.2366 18 8 4.0926 -5.8172 3.5763 19 6 3.5790 -5.2209 1.1859 20 6 2.6703 -4.1581 1.1872 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5574 -0.8880 23 1 0.6246 -2.5563 0.8919 24 1 2.3172 -3.7498 -2.1342 25 1 3.9019 -5.6055 -2.1775 26 1 3.3782 -6.3403 3.9649 27 1 2.3182 -3.7459 2.1213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260719936.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = 37.226335 kcal Electronic energy + Delta-G solvation = -13691.128022 eV Core-core repulsion = 11222.304552 eV Total energy + Delta-G solvation = -2468.823470 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.97171 -37.56817 -36.72918 -33.16639 -31.53357 -30.26490 -29.34436 -26.62519 -23.29541 -22.53601 -21.55175 -20.42848 -17.80590 -17.18258 -16.38888 -16.16610 -15.17908 -14.74188 -14.39362 -13.83275 -13.43076 -13.21949 -12.41884 -12.28854 -11.71368 -11.26921 -11.12147 -10.85378 -10.64473 -10.52879 -10.03867 -9.81617 -9.55726 -9.34229 -8.42286 -8.23689 -7.33718 -6.04189 -4.08324 1.28127 2.03241 2.51446 2.77254 3.32821 3.36862 3.40503 3.97826 4.28523 4.49126 4.93768 5.13709 5.30489 5.54381 5.65993 5.82037 6.03170 6.37340 6.45481 6.54264 6.99078 7.08225 7.32406 7.49487 7.57631 7.61373 7.75949 7.80910 7.91428 8.31503 8.96871 9.55836 11.05173 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039920 B = 0.007120 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.233515 B = 3931.792259 C = 4195.680876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.052 3.948 10 C -0.071 4.071 11 C -0.054 4.054 12 C -0.153 4.153 13 C 0.115 3.885 14 N -0.502 5.502 15 H 0.439 0.561 16 N -0.273 5.273 17 C 0.278 3.722 18 O -0.454 6.454 19 C -0.186 4.186 20 C -0.048 4.048 21 H 0.263 0.737 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.129 0.871 25 H 0.120 0.880 26 H 0.399 0.601 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -11.590 0.195 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.016 3.984 10 C -0.072 4.072 11 C -0.075 4.075 12 C -0.176 4.176 13 C 0.001 3.999 14 N -0.223 5.223 15 H 0.284 0.716 16 N -0.100 5.100 17 C 0.060 3.940 18 O -0.257 6.257 19 C -0.195 4.195 20 C -0.069 4.069 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.147 0.853 25 H 0.138 0.862 26 H 0.256 0.744 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.253 -11.975 0.439 13.517 hybrid contribution -0.124 0.990 -0.335 1.052 sum 6.129 -10.986 0.105 12.580 Atomic orbital electron populations 1.69943 1.06021 1.26941 1.50436 1.24999 0.94862 0.99217 0.95144 0.86610 0.79553 0.82848 0.78770 1.20193 1.21262 1.20134 1.21061 0.93055 0.89964 1.51115 0.92514 1.18305 0.92345 0.89316 0.98465 1.20270 0.98665 0.96934 0.91363 1.20832 0.94394 0.93338 0.98920 1.19750 1.02921 1.00609 0.94277 1.18630 0.94272 0.91541 0.95435 1.45311 1.41913 1.32268 1.02821 0.71635 1.76413 1.22729 1.21517 0.89358 1.20847 0.95496 0.93353 0.84279 1.84879 1.58214 1.68009 1.14587 1.19981 1.05287 1.03008 0.91189 1.20256 0.94679 0.92889 0.99027 0.92785 0.95244 0.95261 0.85274 0.86203 0.74444 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.51 -14.10 9.09 -34.44 -0.31 -14.41 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.05 1.30 5.08 -29.03 -0.15 1.16 15 10 C -0.07 -1.48 5.03 -104.98 -0.53 -2.01 15 11 C -0.05 -0.98 9.61 -39.91 -0.38 -1.37 15 12 C -0.15 -2.40 10.03 -39.78 -0.40 -2.80 15 13 C 0.11 1.89 7.33 -84.17 -0.62 1.27 15 14 N -0.50 -7.19 7.36 32.36 0.24 -6.95 15 15 H 0.44 4.58 8.96 -182.78 -1.64 2.94 15 16 N -0.27 -4.40 12.56 31.79 0.40 -4.00 15 17 C 0.28 4.61 8.72 -14.88 -0.13 4.48 15 18 O -0.45 -6.38 13.66 -19.53 -0.27 -6.65 15 19 C -0.19 -3.38 6.37 -105.11 -0.67 -4.05 15 20 C -0.05 -0.94 9.68 -39.61 -0.38 -1.33 15 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 22 H 0.03 0.75 8.08 -51.93 -0.42 0.33 15 23 H 0.03 0.76 8.07 -51.93 -0.42 0.34 15 24 H 0.13 2.18 8.06 -52.49 -0.42 1.75 15 25 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 26 H 0.40 3.32 9.06 45.56 0.41 3.73 15 27 H 0.13 2.41 8.06 -52.48 -0.42 1.99 15 LS Contribution 248.54 15.07 3.75 3.75 Total: -1.00 -31.97 248.54 -6.71 -38.68 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.87 Total: 1.57 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -3.67 Total: -17.50 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 1.37 Total: -36.19 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.27 Total: -6.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.97 -6.71 -38.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719936.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.904 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds