Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47155 * 239.99646 * 3 2 1 5 5 H 1.48495 * 109.47448 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47298 * 119.99833 * 3 2 1 7 7 C 1.37886 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99375 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46825 * 179.97438 * 9 7 2 11 11 C 1.38954 * 119.69310 * 269.98062 * 10 9 7 12 12 C 1.36593 * 120.80601 * 180.02562 * 11 10 9 13 13 C 1.39310 * 119.84824 * 359.95558 * 12 11 10 14 14 N 1.37038 * 133.80575 * 180.02562 * 13 12 11 15 15 H 0.97006 * 125.40855 * 0.04518 * 14 13 12 16 16 N 1.39857 * 109.17556 * 179.77930 * 14 13 12 17 17 C 1.30526 * 110.05151 * 0.42651 * 16 14 13 18 18 O 1.35932 * 126.15821 * 179.83829 * 17 16 14 19 19 C 1.40803 * 119.40155 * 0.06173 * 13 12 11 20 20 C 1.36496 * 119.68670 * 90.00922 * 10 9 7 21 21 H 0.96999 * 119.99714 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46471 * 59.99846 * 9 7 2 23 23 H 1.08993 * 109.47165 * 300.00532 * 9 7 2 24 24 H 1.07999 * 119.59621 * 0.02562 * 11 10 9 25 25 H 1.08001 * 120.08051 * 179.97438 * 12 11 10 26 26 H 0.96700 * 114.00406 * 269.69949 * 18 17 16 27 27 H 1.08006 * 120.17715 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2302 -3.6447 0.0015 11 6 2.6763 -4.1687 -1.2057 12 6 3.5633 -5.2070 -1.2325 13 6 4.0305 -5.7507 -0.0380 14 7 4.8992 -6.7660 0.2664 15 1 5.3691 -7.3163 -0.3796 16 7 5.0050 -6.8787 1.6564 17 6 4.2414 -5.9933 2.2366 18 8 4.0926 -5.8172 3.5763 19 6 3.5790 -5.2209 1.1859 20 6 2.6703 -4.1581 1.1872 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5574 -0.8880 23 1 0.6246 -2.5563 0.8919 24 1 2.3172 -3.7498 -2.1342 25 1 3.9019 -5.6055 -2.1775 26 1 3.3782 -6.3403 3.9649 27 1 2.3182 -3.7459 2.1213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260719936.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = 12.522904 kcal Electronic energy + Delta-G solvation = -13692.199244 eV Core-core repulsion = 11222.304552 eV Total energy + Delta-G solvation = -2469.894691 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.26614 -38.87980 -37.99749 -35.15143 -32.99522 -31.86206 -30.67230 -28.40036 -25.14596 -23.91927 -22.80190 -21.93145 -19.07800 -18.45632 -18.37926 -17.62560 -16.60315 -16.35309 -15.98570 -15.08628 -14.75077 -14.70299 -14.37774 -13.62852 -13.39081 -13.15847 -12.65907 -12.52794 -12.45817 -12.16972 -11.50592 -11.45758 -11.29384 -10.95114 -10.55773 -9.60343 -8.76238 -8.14496 -6.28571 -0.04995 0.60786 1.27535 1.42756 1.44641 1.52783 1.59964 2.42525 2.78121 2.90991 3.14892 3.64064 3.87207 4.21039 4.35409 4.49443 4.61983 4.92693 5.07107 5.21723 5.38791 5.40305 5.51424 5.79192 5.91205 6.07053 6.23065 6.35981 6.52568 6.67420 6.84111 7.39811 8.92551 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039920 B = 0.007120 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.233515 B = 3931.792259 C = 4195.680876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.061 3.939 10 C -0.097 4.097 11 C -0.066 4.066 12 C -0.131 4.131 13 C 0.118 3.882 14 N -0.483 5.483 15 H 0.458 0.542 16 N -0.276 5.276 17 C 0.276 3.724 18 O -0.460 6.460 19 C -0.207 4.207 20 C -0.057 4.057 21 H 0.265 0.735 22 H 0.011 0.989 23 H 0.003 0.997 24 H 0.137 0.863 25 H 0.165 0.835 26 H 0.423 0.577 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -12.504 -0.471 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.098 4.098 11 C -0.087 4.087 12 C -0.152 4.152 13 C 0.003 3.997 14 N -0.206 5.206 15 H 0.307 0.693 16 N -0.104 5.104 17 C 0.059 3.941 18 O -0.267 6.267 19 C -0.216 4.216 20 C -0.077 4.077 21 H 0.074 0.926 22 H 0.029 0.971 23 H 0.021 0.979 24 H 0.155 0.845 25 H 0.182 0.818 26 H 0.283 0.717 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.083 -12.933 -0.223 15.253 hybrid contribution -0.666 1.153 -0.083 1.334 sum 7.418 -11.780 -0.306 13.924 Atomic orbital electron populations 1.70060 1.07528 1.27909 1.51390 1.25851 0.95696 1.02828 0.94713 0.85574 0.78356 0.78527 0.79060 1.19173 1.20653 1.19711 1.21393 0.93051 0.91427 1.50795 0.92913 1.18047 0.92687 0.90615 0.96209 1.19963 0.99521 0.97002 0.93322 1.20892 0.95359 0.94407 0.97996 1.20052 1.00686 0.98689 0.95783 1.18789 0.94081 0.91595 0.95186 1.45335 1.41032 1.31538 1.02673 0.69324 1.76418 1.22526 1.21337 0.90097 1.20884 0.95284 0.93032 0.84947 1.84825 1.59469 1.68875 1.13489 1.20142 1.05488 1.03018 0.92932 1.20128 0.95540 0.93826 0.98237 0.92618 0.97065 0.97889 0.84487 0.81767 0.71655 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.89 15 2 C 0.01 0.42 5.46 84.66 0.46 0.88 15 3 Si 0.96 43.99 29.54 68.60 2.03 46.02 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.53 -29.71 9.09 25.60 0.23 -29.48 15 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 15 9 C 0.06 3.19 5.08 29.10 0.15 3.33 15 10 C -0.10 -4.11 5.03 -20.10 -0.10 -4.21 15 11 C -0.07 -2.32 9.61 22.06 0.21 -2.11 15 12 C -0.13 -3.67 10.03 22.14 0.22 -3.45 15 13 C 0.12 3.58 7.33 39.22 0.29 3.86 15 14 N -0.48 -12.16 7.36 -51.53 -0.38 -12.54 15 15 H 0.46 7.66 8.96 -213.47 -1.91 5.75 15 16 N -0.28 -8.16 12.56 -166.93 -2.10 -10.25 15 17 C 0.28 8.67 8.72 86.97 0.76 9.43 15 18 O -0.46 -12.26 13.66 -92.78 -1.27 -13.52 15 19 C -0.21 -7.27 6.37 -20.18 -0.13 -7.39 15 20 C -0.06 -2.27 9.68 22.25 0.22 -2.05 15 21 H 0.26 14.83 8.31 -92.71 -0.77 14.06 15 22 H 0.01 0.60 8.08 -2.39 -0.02 0.58 15 23 H 0.00 0.16 8.07 -2.39 -0.02 0.14 15 24 H 0.14 4.50 8.06 -2.91 -0.02 4.48 15 25 H 0.16 3.15 8.06 -2.91 -0.02 3.13 15 26 H 0.42 6.36 9.06 -74.06 -0.67 5.69 15 27 H 0.12 4.66 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -68.87 248.54 -0.49 -69.36 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -1.37 Total: 7.02 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 2.31 Total: -31.18 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.19 Total: -77.69 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.27 Total: -13.52 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.87 -0.49 -69.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719936.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.887 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds