Wall clock time and date at job start Mon Mar 30 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47215 * 269.99948 * 3 2 1 5 5 H 1.48499 * 109.47320 * 29.99526 * 3 2 1 6 6 H 1.48505 * 109.47274 * 149.99658 * 3 2 1 7 7 C 1.37871 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00029 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00208 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47078 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.67083 * 125.00070 * 10 9 7 12 12 N 1.37137 * 107.18097 * 179.69728 * 11 10 9 13 13 C 1.36522 * 132.49888 * 180.24233 * 12 11 10 14 14 C 1.34785 * 120.68868 * 179.97438 * 13 12 11 15 15 C 1.40956 * 120.23146 * 0.03256 * 14 13 12 16 16 O 1.35754 * 120.21776 * 180.02562 * 15 14 13 17 17 C 1.36616 * 119.56343 * 359.97438 * 15 14 13 18 18 C 1.37106 * 106.96334 * 0.26104 * 12 11 10 19 19 N 1.32644 * 108.02160 * 0.02562 * 18 12 11 20 20 H 0.96992 * 119.99894 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47260 * 60.00434 * 9 7 2 22 22 H 1.08998 * 109.47364 * 299.99989 * 9 7 2 23 23 H 1.08002 * 126.41284 * 359.96416 * 11 10 9 24 24 H 1.08005 * 119.65154 * 359.97438 * 13 12 11 25 25 H 1.08003 * 119.88126 * 179.97438 * 14 13 12 26 26 H 0.96703 * 113.99398 * 269.97821 * 16 15 14 27 27 H 1.07997 * 120.36170 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 6 4.8696 -3.1470 -0.8970 12 7 5.0731 -4.4545 -0.5370 13 6 5.8350 -5.4514 -1.0751 14 6 5.8600 -6.6770 -0.5146 15 6 5.0956 -6.9456 0.6388 16 8 5.1213 -8.1799 1.2034 17 6 4.3295 -5.9553 1.1855 18 6 4.3179 -4.6829 0.5843 19 7 3.6837 -3.5582 0.8880 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8912 22 1 3.8753 -0.6803 -0.8888 23 1 5.3145 -2.6373 -1.7388 24 1 6.4239 -5.2560 -1.9591 25 1 6.4670 -7.4562 -0.9514 26 1 4.4488 -8.7837 0.8594 27 1 3.7391 -6.1467 2.0693 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260721928.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:50 Heat of formation + Delta-G solvation = 47.471386 kcal Electronic energy + Delta-G solvation = -13667.867618 eV Core-core repulsion = 11199.488406 eV Total energy + Delta-G solvation = -2468.379211 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.34780 -38.70283 -36.02473 -33.02157 -32.61512 -30.88247 -28.93627 -27.24473 -23.71506 -22.42423 -22.33731 -19.79434 -18.24235 -17.60956 -16.72037 -16.31122 -15.64413 -15.06839 -14.59515 -14.12503 -13.93030 -13.22165 -12.90854 -12.44687 -12.19105 -11.82292 -11.27636 -10.88713 -10.58975 -10.47620 -10.44360 -9.97158 -9.36389 -9.25952 -8.51651 -8.17183 -7.42859 -5.98288 -3.95836 0.85513 1.43385 2.90165 3.25940 3.32942 3.41081 3.43597 3.79521 4.00551 4.47864 4.48111 4.86140 4.92948 5.08182 5.33875 5.52471 5.71859 5.84426 5.99266 6.16982 6.23481 6.56756 6.91038 7.12251 7.26243 7.39840 7.53076 7.75320 8.49648 8.63312 9.10752 9.60910 11.15275 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.062078 B = 0.006449 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.935185 B = 4340.773802 C = 4612.785662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.052 3.948 10 C 0.122 3.878 11 C -0.120 4.120 12 N -0.373 5.373 13 C 0.080 3.920 14 C -0.180 4.180 15 C 0.107 3.893 16 O -0.491 6.491 17 C -0.101 4.101 18 C 0.219 3.781 19 N -0.468 5.468 20 H 0.263 0.737 21 H 0.039 0.961 22 H 0.031 0.969 23 H 0.180 0.820 24 H 0.162 0.838 25 H 0.149 0.851 26 H 0.390 0.610 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.658 -12.720 -3.019 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.095 0.905 9 C 0.014 3.986 10 C -0.009 4.009 11 C -0.248 4.248 12 N -0.048 5.048 13 C -0.043 4.043 14 C -0.203 4.203 15 C 0.056 3.944 16 O -0.301 6.301 17 C -0.122 4.122 18 C -0.024 4.024 19 N -0.188 5.188 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.197 0.803 24 H 0.179 0.821 25 H 0.167 0.833 26 H 0.246 0.754 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.438 -12.182 -2.081 17.534 hybrid contribution 0.506 0.492 -1.054 1.268 sum 12.944 -11.690 -3.134 17.721 Atomic orbital electron populations 1.69903 1.06217 1.26775 1.51202 1.24981 0.94781 0.98866 0.94816 0.86825 0.80477 0.83843 0.78461 1.20242 1.21247 1.18909 1.20898 0.88086 0.94842 1.50319 0.90543 1.18277 0.97874 0.84930 0.97512 1.21488 0.92179 0.97423 0.89849 1.22570 1.11811 0.82773 1.07640 1.43036 1.30583 1.09653 1.21540 1.21385 0.96110 0.87334 0.99502 1.20863 1.04656 0.96824 0.97922 1.17867 0.97369 0.86003 0.93124 1.84795 1.59254 1.20982 1.65056 1.20380 1.00936 0.89041 1.01821 1.20850 0.96223 0.96429 0.88868 1.70881 1.22988 0.97346 1.27604 0.92717 0.94304 0.95075 0.80316 0.82103 0.83316 0.75354 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.55 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 15 7 C -0.50 -14.89 9.62 -34.44 -0.33 -15.22 15 8 H 0.08 2.52 7.98 -52.48 -0.42 2.10 15 9 C 0.05 1.30 4.60 -29.04 -0.13 1.16 15 10 C 0.12 2.80 6.27 -82.96 -0.52 2.28 15 11 C -0.12 -2.21 11.64 -16.34 -0.19 -2.40 15 12 N -0.37 -6.32 2.95 -62.68 -0.19 -6.50 15 13 C 0.08 0.97 10.94 -16.69 -0.18 0.79 15 14 C -0.18 -1.96 9.94 -39.78 -0.40 -2.35 15 15 C 0.11 1.34 6.71 -39.14 -0.26 1.07 15 16 O -0.49 -5.02 13.50 -18.97 -0.26 -5.28 15 17 C -0.10 -1.57 10.04 -39.23 -0.39 -1.96 15 18 C 0.22 4.23 7.80 -156.03 -1.22 3.02 15 19 N -0.47 -11.03 11.29 -9.04 -0.10 -11.13 15 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 21 H 0.04 0.97 7.20 -51.93 -0.37 0.60 15 22 H 0.03 0.71 7.53 -51.93 -0.39 0.32 15 23 H 0.18 2.62 8.06 -52.49 -0.42 2.20 15 24 H 0.16 1.32 8.06 -52.48 -0.42 0.90 15 25 H 0.15 1.12 8.06 -52.48 -0.42 0.70 15 26 H 0.39 2.05 9.06 45.56 0.41 2.46 15 27 H 0.15 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 245.27 15.07 3.70 3.70 Total: -1.00 -35.79 245.27 -6.10 -41.88 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -1.63 Total: -0.25 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.72 Total: -11.75 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.49 Total: -45.18 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.26 Total: -5.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -35.79 -6.10 -41.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260721928.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.353 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds