Wall clock time and date at job start Mon Mar 30 2020 02:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46975 * 2 1 4 4 C 1.40042 * 111.00056 * 70.58073 * 3 2 1 5 5 C 1.39398 * 129.94932 * 283.81331 * 4 3 2 6 6 C 1.37910 * 120.19612 * 179.57153 * 5 4 3 7 7 C 1.38309 * 120.26758 * 0.20267 * 6 5 4 8 8 C 1.38297 * 119.87724 * 359.57342 * 7 6 5 9 9 C 1.37915 * 120.08311 * 0.56727 * 8 7 6 10 10 C 1.51580 * 131.56362 * 179.32697 * 9 8 7 11 11 C 1.47903 * 111.00128 * 190.56762 * 3 2 1 12 12 H 1.09003 * 110.77647 * 147.13339 * 11 3 2 13 13 C 1.50706 * 110.77884 * 23.89587 * 11 3 2 14 14 H 1.08000 * 119.99493 * 275.07692 * 13 11 3 15 15 C 1.37875 * 120.00210 * 95.07142 * 13 11 3 16 16 N 1.31506 * 120.00043 * 180.02562 * 15 13 11 17 17 Si 1.86804 * 119.99959 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47037 * 89.99747 * 17 15 13 19 19 H 1.48497 * 109.47085 * 209.99960 * 17 15 13 20 20 H 1.48500 * 109.47149 * 330.00287 * 17 15 13 21 21 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47488 * 299.99676 * 1 2 3 23 23 H 1.09004 * 109.47388 * 59.99708 * 1 2 3 24 24 H 1.09005 * 109.47142 * 240.00435 * 2 1 3 25 25 H 1.08990 * 109.47533 * 120.00333 * 2 1 3 26 26 H 1.07998 * 119.90892 * 359.54908 * 5 4 3 27 27 H 1.08007 * 119.86767 * 179.97438 * 6 5 4 28 28 H 1.08000 * 120.05672 * 179.83508 * 7 6 5 29 29 H 1.08005 * 119.95527 * 180.30842 * 8 7 6 30 30 H 1.08994 * 110.73935 * 77.86806 * 10 9 8 31 31 H 1.08999 * 110.89427 * 314.60890 * 10 9 8 32 32 H 0.97001 * 120.00126 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7771 2.0031 1.2330 5 6 0.5912 2.5099 1.7623 6 6 0.5794 3.0773 3.0192 7 6 1.7440 3.1515 3.7616 8 6 2.9235 2.6467 3.2453 9 6 2.9413 2.0809 1.9877 10 6 4.0664 1.4713 1.1750 11 6 3.4760 1.4323 -0.2532 12 1 3.7432 2.3325 -0.8069 13 6 3.9309 0.1991 -0.9905 14 1 4.1713 -0.6998 -0.4423 15 6 4.0399 0.2185 -2.3648 16 7 4.4363 -0.8578 -3.0082 17 14 3.6245 1.7735 -3.3129 18 1 4.8443 2.6088 -3.4526 19 1 3.1158 1.4109 -4.6601 20 1 2.5831 2.5371 -2.5796 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 -0.3209 2.4583 1.1864 27 1 -0.3423 3.4687 3.4240 28 1 1.7314 3.5990 4.7444 29 1 3.8326 2.6995 3.8259 30 1 4.2947 0.4650 1.5260 31 1 4.9554 2.1012 1.2082 32 1 4.5126 -0.8443 -3.9751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260738466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:27 Heat of formation + Delta-G solvation = 36.254754 kcal Electronic energy + Delta-G solvation = -14706.797831 eV Core-core repulsion = 12439.191235 eV Total energy + Delta-G solvation = -2267.606595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.08913 -36.39358 -32.77807 -32.36815 -30.04847 -29.07150 -27.48042 -25.12101 -22.33457 -21.40530 -20.41268 -19.59149 -16.92345 -15.88246 -15.33066 -15.00697 -14.48710 -13.90196 -13.48672 -13.43507 -12.80682 -12.51171 -12.25989 -12.05326 -11.59238 -11.53237 -11.02677 -10.94338 -10.77627 -10.35306 -10.12819 -9.93268 -9.71568 -9.44818 -8.79397 -8.54085 -8.28338 -7.03886 -6.24669 -4.28901 1.85072 1.87648 3.26843 3.36469 3.51218 4.21111 4.36472 4.56304 5.26486 5.28844 5.37985 5.47841 5.72812 5.88575 5.92929 5.99499 6.09638 6.14494 6.20393 6.30529 6.50129 6.58977 6.66915 6.81009 6.84475 6.90953 7.06793 7.11678 7.19000 7.33844 7.48021 8.00024 8.19942 8.45533 8.77888 9.36891 10.85338 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.036820 B = 0.010467 C = 0.009658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.278566 B = 2674.401969 C = 2898.579049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.070 3.930 3 N -0.503 5.503 4 C 0.112 3.888 5 C -0.130 4.130 6 C -0.114 4.114 7 C -0.152 4.152 8 C -0.097 4.097 9 C -0.143 4.143 10 C -0.098 4.098 11 C 0.176 3.824 12 H 0.058 0.942 13 C -0.517 4.517 14 H 0.078 0.922 15 C 0.084 3.916 16 N -0.886 5.886 17 Si 0.873 3.127 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.247 1.247 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.110 0.890 25 H 0.023 0.977 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 5.559 8.681 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.055 4.055 3 N -0.221 5.221 4 C 0.014 3.986 5 C -0.150 4.150 6 C -0.132 4.132 7 C -0.171 4.171 8 C -0.115 4.115 9 C -0.146 4.146 10 C -0.137 4.137 11 C 0.072 3.928 12 H 0.076 0.924 13 C -0.555 4.555 14 H 0.096 0.904 15 C -0.121 4.121 16 N -0.522 5.522 17 Si 0.699 3.301 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.170 1.170 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.128 0.872 25 H 0.042 0.958 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.960 5.677 8.010 11.485 hybrid contribution 0.241 0.435 0.022 0.498 sum -5.719 6.112 8.032 11.601 Atomic orbital electron populations 1.21990 0.97220 1.00556 1.01450 1.21922 0.92785 0.87913 1.02860 1.60789 1.20024 1.16336 1.24972 1.19998 0.93263 0.95374 0.89923 1.20564 0.96909 1.01436 0.96078 1.20779 0.97795 1.00165 0.94504 1.20842 0.92900 1.03482 0.99902 1.20363 0.97748 0.98803 0.94620 1.21436 0.97967 1.00768 0.94390 1.21800 0.95628 0.99825 0.96440 1.20674 0.81636 0.98590 0.91907 0.92413 1.20855 1.45420 0.97373 0.91846 0.90401 1.25060 0.93129 0.96321 0.97636 1.69899 1.45042 1.28365 1.08864 0.86846 0.79958 0.84032 0.79259 1.20395 1.21425 1.17011 0.93089 0.93370 0.92635 0.87181 0.95817 0.86474 0.86653 0.86784 0.87032 0.90549 0.91286 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.80 37.16 0.36 -2.36 16 2 C 0.07 1.49 4.90 -3.83 -0.02 1.47 16 3 N -0.50 -11.21 5.05 -162.87 -0.82 -12.04 16 4 C 0.11 2.27 5.29 -83.41 -0.44 1.82 16 5 C -0.13 -2.25 8.58 -39.27 -0.34 -2.59 16 6 C -0.11 -1.70 10.02 -39.68 -0.40 -2.10 16 7 C -0.15 -2.25 10.06 -39.53 -0.40 -2.65 16 8 C -0.10 -1.60 10.03 -39.68 -0.40 -2.00 16 9 C -0.14 -2.79 6.23 -104.04 -0.65 -3.43 16 10 C -0.10 -2.04 6.50 -26.61 -0.17 -2.22 16 11 C 0.18 4.14 2.74 -67.47 -0.18 3.95 16 12 H 0.06 1.41 5.72 -51.93 -0.30 1.11 16 13 C -0.52 -13.64 6.33 -34.44 -0.22 -13.86 16 14 H 0.08 2.22 7.92 -52.49 -0.42 1.81 16 15 C 0.08 2.30 5.41 -17.82 -0.10 2.20 16 16 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 17 Si 0.87 21.09 27.04 -169.99 -4.60 16.49 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.25 -5.97 6.84 56.52 0.39 -5.58 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.80 5.57 -51.93 -0.29 0.51 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.11 2.64 6.20 -51.93 -0.32 2.32 16 25 H 0.02 0.51 8.05 -51.93 -0.42 0.09 16 26 H 0.12 1.89 7.14 -52.49 -0.37 1.51 16 27 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 28 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.08 1.61 7.82 -51.93 -0.41 1.21 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 258.32 15.07 3.89 3.89 Total: -1.00 -28.30 258.32 -7.91 -36.21 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.21 Total: 2.04 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -2.95 Total: -21.76 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.05 Total: -36.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.60 Total: 16.49 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.30 -7.91 -36.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.465 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds