Wall clock time and date at job start Mon Mar 30 2020 02:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46975 * 2 1 4 4 C 1.40042 * 111.00056 * 70.58073 * 3 2 1 5 5 C 1.39398 * 129.94932 * 283.81331 * 4 3 2 6 6 C 1.37910 * 120.19612 * 179.57153 * 5 4 3 7 7 C 1.38309 * 120.26758 * 0.20267 * 6 5 4 8 8 C 1.38297 * 119.87724 * 359.57342 * 7 6 5 9 9 C 1.37915 * 120.08311 * 0.56727 * 8 7 6 10 10 C 1.51580 * 131.56362 * 179.32697 * 9 8 7 11 11 C 1.47903 * 111.00128 * 190.56762 * 3 2 1 12 12 H 1.09003 * 110.77647 * 147.13339 * 11 3 2 13 13 C 1.50706 * 110.77884 * 23.89587 * 11 3 2 14 14 H 1.08000 * 119.99493 * 275.07692 * 13 11 3 15 15 C 1.37875 * 120.00210 * 95.07142 * 13 11 3 16 16 N 1.31506 * 120.00043 * 180.02562 * 15 13 11 17 17 Si 1.86804 * 119.99959 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47037 * 89.99747 * 17 15 13 19 19 H 1.48497 * 109.47085 * 209.99960 * 17 15 13 20 20 H 1.48500 * 109.47149 * 330.00287 * 17 15 13 21 21 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47488 * 299.99676 * 1 2 3 23 23 H 1.09004 * 109.47388 * 59.99708 * 1 2 3 24 24 H 1.09005 * 109.47142 * 240.00435 * 2 1 3 25 25 H 1.08990 * 109.47533 * 120.00333 * 2 1 3 26 26 H 1.07998 * 119.90892 * 359.54908 * 5 4 3 27 27 H 1.08007 * 119.86767 * 179.97438 * 6 5 4 28 28 H 1.08000 * 120.05672 * 179.83508 * 7 6 5 29 29 H 1.08005 * 119.95527 * 180.30842 * 8 7 6 30 30 H 1.08994 * 110.73935 * 77.86806 * 10 9 8 31 31 H 1.08999 * 110.89427 * 314.60890 * 10 9 8 32 32 H 0.97001 * 120.00126 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7771 2.0031 1.2330 5 6 0.5912 2.5099 1.7623 6 6 0.5794 3.0773 3.0192 7 6 1.7440 3.1515 3.7616 8 6 2.9235 2.6467 3.2453 9 6 2.9413 2.0809 1.9877 10 6 4.0664 1.4713 1.1750 11 6 3.4760 1.4323 -0.2532 12 1 3.7432 2.3325 -0.8069 13 6 3.9309 0.1991 -0.9905 14 1 4.1713 -0.6998 -0.4423 15 6 4.0399 0.2185 -2.3648 16 7 4.4363 -0.8578 -3.0082 17 14 3.6245 1.7735 -3.3129 18 1 4.8443 2.6088 -3.4526 19 1 3.1158 1.4109 -4.6601 20 1 2.5831 2.5371 -2.5796 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 -0.3209 2.4583 1.1864 27 1 -0.3423 3.4687 3.4240 28 1 1.7314 3.5990 4.7444 29 1 3.8326 2.6995 3.8259 30 1 4.2947 0.4650 1.5260 31 1 4.9554 2.1012 1.2082 32 1 4.5126 -0.8443 -3.9751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260738466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:27 Heat of formation + Delta-G solvation = 19.135828 kcal Electronic energy + Delta-G solvation = -14707.540163 eV Core-core repulsion = 12439.191235 eV Total energy + Delta-G solvation = -2268.348928 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.60561 -37.84932 -34.73012 -34.00754 -31.43248 -30.72732 -29.01618 -26.90786 -23.89070 -22.91010 -21.87358 -21.27370 -18.95711 -17.30128 -16.94757 -16.41902 -16.25663 -15.58679 -15.02153 -14.93787 -14.68787 -14.02336 -13.77422 -13.61265 -13.08525 -13.02673 -12.80088 -12.49352 -12.37121 -11.97986 -11.78589 -11.72925 -11.48445 -11.37654 -10.81949 -10.10142 -9.61088 -8.61665 -8.37365 -6.43534 0.53150 0.56967 1.32591 1.37764 1.56097 2.33777 2.77007 2.91859 3.40766 3.86114 4.10944 4.22999 4.28137 4.35354 4.42952 4.49105 4.65382 4.66500 4.78126 4.88164 4.96886 5.11340 5.14558 5.25880 5.32092 5.39688 5.42732 5.60734 5.67754 5.75848 6.07128 6.14013 6.36769 6.54677 6.80389 7.23800 8.76668 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.036820 B = 0.010467 C = 0.009658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.278566 B = 2674.401969 C = 2898.579049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 N -0.512 5.512 4 C 0.077 3.923 5 C -0.133 4.133 6 C -0.104 4.104 7 C -0.139 4.139 8 C -0.100 4.100 9 C -0.165 4.165 10 C -0.094 4.094 11 C 0.172 3.828 12 H 0.051 0.949 13 C -0.508 4.508 14 H 0.039 0.961 15 C 0.035 3.965 16 N -0.932 5.932 17 Si 0.935 3.065 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.246 1.246 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.128 0.872 27 H 0.156 0.844 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 7.993 10.804 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 N -0.230 5.230 4 C -0.020 4.020 5 C -0.153 4.153 6 C -0.122 4.122 7 C -0.157 4.157 8 C -0.118 4.118 9 C -0.168 4.168 10 C -0.133 4.133 11 C 0.067 3.933 12 H 0.068 0.932 13 C -0.547 4.547 14 H 0.058 0.942 15 C -0.166 4.166 16 N -0.570 5.570 17 Si 0.759 3.241 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.170 1.170 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.027 0.973 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.790 8.123 10.160 15.162 hybrid contribution 0.778 -0.325 -0.443 0.952 sum -7.012 7.797 9.717 14.297 Atomic orbital electron populations 1.21888 0.93969 1.02013 1.02152 1.21794 0.95431 0.87578 1.00212 1.60668 1.18509 1.16585 1.27249 1.20160 0.94969 0.97349 0.89543 1.20815 0.96122 1.01138 0.97221 1.21262 0.99585 0.98279 0.93122 1.21346 0.91757 1.01399 1.01201 1.20694 0.99732 0.97972 0.93405 1.21391 0.96772 1.02665 0.95944 1.21612 0.96882 0.99505 0.95269 1.20538 0.83275 0.96370 0.93108 0.93160 1.20881 1.44643 0.97244 0.91893 0.94228 1.25761 0.93288 0.98985 0.98535 1.70010 1.47359 1.30407 1.09200 0.85880 0.79888 0.80570 0.77772 1.19418 1.21203 1.16953 0.91316 0.91805 0.92599 0.90976 0.97303 0.85407 0.82650 0.82752 0.84921 0.92218 0.90202 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.80 71.98 0.71 -4.18 16 2 C 0.08 3.29 4.90 86.30 0.42 3.71 16 3 N -0.51 -22.99 5.05 -669.22 -3.38 -26.37 16 4 C 0.08 2.99 5.29 38.28 0.20 3.20 16 5 C -0.13 -4.18 8.58 22.47 0.19 -3.99 16 6 C -0.10 -2.57 10.02 22.21 0.22 -2.35 16 7 C -0.14 -3.35 10.06 22.30 0.22 -3.13 16 8 C -0.10 -2.96 10.03 22.21 0.22 -2.73 16 9 C -0.17 -6.24 6.23 -19.49 -0.12 -6.36 16 10 C -0.09 -3.99 6.50 30.67 0.20 -3.79 16 11 C 0.17 8.31 2.74 44.52 0.12 8.44 16 12 H 0.05 2.48 5.72 -2.39 -0.01 2.47 16 13 C -0.51 -28.28 6.33 25.60 0.16 -28.12 16 14 H 0.04 2.44 7.92 -2.91 -0.02 2.42 16 15 C 0.04 2.00 5.41 84.66 0.46 2.46 16 16 N -0.93 -56.25 13.96 21.45 0.30 -55.95 16 17 Si 0.93 44.66 27.04 68.60 1.86 46.52 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.25 -11.64 6.84 99.48 0.68 -10.96 16 21 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.06 1.97 5.57 -2.39 -0.01 1.96 16 23 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 24 H 0.07 3.67 6.20 -2.38 -0.01 3.65 16 25 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 26 H 0.13 3.68 7.14 -2.91 -0.02 3.66 16 27 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 29 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.06 2.65 7.82 -2.39 -0.02 2.63 16 31 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.74 258.32 2.86 -60.88 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.07 Total: 11.77 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 3.01 Total: -36.84 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -3.08 Total: -82.32 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.86 Total: 46.52 kcal Total: -63.74 2.86 -60.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.014 kcal (2) G-P(sol) polarization free energy of solvation -63.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds