Wall clock time and date at job start Mon Mar 30 2020 02:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.46775 * 2 1 4 4 C 1.47911 * 111.00330 * 50.07226 * 3 2 1 5 5 C 1.54610 * 102.52693 * 149.12140 * 4 3 2 6 6 C 1.51541 * 102.81427 * 334.62748 * 5 4 3 7 7 C 1.38373 * 108.10252 * 15.66555 * 6 5 4 8 8 C 1.39828 * 119.23163 * 180.81536 * 7 6 5 9 9 C 1.38325 * 120.72820 * 359.72498 * 8 7 6 10 10 C 1.37641 * 120.54264 * 359.72683 * 9 8 7 11 11 C 1.40335 * 131.57516 * 196.00066 * 6 5 4 12 12 C 1.41410 * 120.20662 * 359.11573 * 11 6 5 13 13 H 1.07991 * 120.00318 * 335.07540 * 12 11 6 14 14 C 1.39932 * 119.99720 * 154.80243 * 12 11 6 15 15 N 1.30829 * 119.99858 * 342.55183 * 14 12 11 16 16 Si 1.86800 * 120.00010 * 162.54623 * 14 12 11 17 17 H 1.48505 * 109.46511 * 94.52109 * 16 14 12 18 18 H 1.48501 * 109.47074 * 214.51865 * 16 14 12 19 19 H 1.48493 * 109.47195 * 334.52313 * 16 14 12 20 20 H 1.08998 * 109.47685 * 300.00222 * 1 2 3 21 21 H 1.09003 * 109.47252 * 60.00803 * 1 2 3 22 22 H 1.09004 * 109.46640 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46955 * 239.99700 * 2 1 3 24 24 H 1.08998 * 109.47018 * 119.99633 * 2 1 3 25 25 H 1.09001 * 110.80060 * 267.37847 * 4 3 2 26 26 H 1.09007 * 110.79777 * 30.66948 * 4 3 2 27 27 H 1.09005 * 110.74936 * 216.29986 * 5 4 3 28 28 H 1.09000 * 110.74349 * 92.95730 * 5 4 3 29 29 H 1.08005 * 119.63998 * 179.75793 * 8 7 6 30 30 H 1.08000 * 119.73018 * 179.97438 * 9 8 7 31 31 H 1.07998 * 120.20652 * 180.34184 * 10 9 8 32 32 H 0.97000 * 120.00027 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3607 2.1802 1.0589 5 6 2.4554 3.2034 1.4401 6 6 3.7339 2.4868 1.0551 7 6 3.4014 1.4291 0.2272 8 6 4.4146 0.5948 -0.2550 9 6 5.7369 0.8208 0.0824 10 6 6.0804 1.8765 0.8960 11 6 5.0740 2.7248 1.3970 12 6 5.4122 3.8129 2.2345 13 1 4.7620 4.6733 2.2910 14 6 6.5865 3.7723 2.9944 15 7 7.1900 2.6309 3.2053 16 14 7.2925 5.3479 3.7074 17 1 6.8063 5.5224 5.0997 18 1 8.7755 5.2705 3.7070 19 1 6.8569 6.5033 2.8826 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.4769 2.6859 0.6699 26 1 1.1013 1.5512 1.9105 27 1 2.4356 3.4094 2.5103 28 1 2.3406 4.1232 0.8666 29 1 4.1621 -0.2351 -0.8985 30 1 6.5064 0.1660 -0.2988 31 1 7.1151 2.0513 1.1516 32 1 8.0042 2.6027 3.7317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260774559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:48 Heat of formation + Delta-G solvation = 21.989720 kcal Electronic energy + Delta-G solvation = -14390.590748 eV Core-core repulsion = 12122.365575 eV Total energy + Delta-G solvation = -2268.225174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46471 -35.98794 -33.39504 -32.44938 -30.04010 -28.09844 -27.16922 -24.96669 -22.71694 -21.48572 -19.84977 -19.37996 -16.98188 -15.60576 -15.19133 -14.76657 -14.62469 -14.07427 -13.60713 -13.02995 -12.68140 -11.96494 -11.82400 -11.77967 -11.59343 -11.21620 -11.07966 -10.90135 -10.72855 -10.68661 -10.53852 -10.36357 -9.85637 -9.33309 -9.13495 -8.66442 -7.34606 -6.78209 -6.51804 -4.33805 2.79940 2.96129 3.08067 3.12643 3.23812 3.94541 4.48537 4.70415 5.30456 5.43977 5.49464 5.58639 5.69442 5.79775 5.91686 6.03492 6.24198 6.28329 6.34674 6.46133 6.53203 6.75673 6.83301 6.92633 7.05786 7.15713 7.31465 7.73479 7.79184 7.96684 8.08685 8.14795 8.41567 8.67494 8.92528 9.00521 10.20740 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044506 B = 0.008582 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.984097 B = 3261.936417 C = 3729.365613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 N -0.478 5.478 4 C 0.048 3.952 5 C -0.060 4.060 6 C -0.236 4.236 7 C 0.103 3.897 8 C -0.246 4.246 9 C -0.089 4.089 10 C -0.176 4.176 11 C 0.142 3.858 12 C -0.460 4.460 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.794 5.794 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.260 1.260 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -1.467 -1.567 6.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 N -0.195 5.195 4 C -0.079 4.079 5 C -0.098 4.098 6 C -0.240 4.240 7 C 0.007 3.993 8 C -0.268 4.268 9 C -0.108 4.108 10 C -0.196 4.196 11 C 0.139 3.861 12 C -0.489 4.489 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.419 5.419 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.184 1.184 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.342 -1.385 -1.940 6.775 hybrid contribution 0.568 0.232 1.029 1.199 sum -5.773 -1.153 -0.910 5.957 Atomic orbital electron populations 1.21894 0.95463 1.01360 1.02261 1.22164 0.94896 0.89835 1.01149 1.60868 1.03514 1.10907 1.44169 1.23137 0.97554 0.95187 0.91980 1.20858 0.91901 0.96754 1.00264 1.20256 0.93978 1.01370 1.08425 1.19201 0.87198 0.96738 0.96213 1.19660 0.92066 1.03604 1.11447 1.20414 0.94213 0.97718 0.98457 1.21212 0.99389 0.97992 1.01005 1.16934 0.88558 0.91441 0.89214 1.19532 1.04984 1.02988 1.21437 0.90492 1.25902 0.96064 0.97100 0.94986 1.69842 1.16219 1.25903 1.29928 0.86353 0.78549 0.82581 0.79561 1.19641 1.20052 1.18415 0.92585 0.92111 0.92524 0.90940 0.94426 0.90551 0.93502 0.91844 0.92052 0.89732 0.89090 0.86345 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.61 37.16 0.36 -1.63 16 2 C 0.05 0.78 5.32 -3.82 -0.02 0.76 16 3 N -0.48 -9.60 5.18 -169.03 -0.87 -10.48 16 4 C 0.05 0.87 5.41 -2.42 -0.01 0.86 16 5 C -0.06 -1.27 6.74 -26.62 -0.18 -1.45 16 6 C -0.24 -5.93 6.11 -103.37 -0.63 -6.56 16 7 C 0.10 2.43 5.90 -83.43 -0.49 1.94 16 8 C -0.25 -5.78 9.56 -38.95 -0.37 -6.15 16 9 C -0.09 -2.15 9.99 -39.77 -0.40 -2.55 16 10 C -0.18 -4.67 8.70 -38.82 -0.34 -5.01 16 11 C 0.14 3.84 5.56 -106.92 -0.59 3.24 16 12 C -0.46 -12.27 8.86 -37.74 -0.33 -12.60 16 13 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 14 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 15 N -0.79 -20.61 11.00 55.55 0.61 -20.00 16 16 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H 0.06 0.71 6.61 -51.93 -0.34 0.37 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.19 7.78 -51.93 -0.40 0.79 16 24 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.81 7.30 -51.93 -0.38 0.43 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.80 7.65 -52.48 -0.40 1.40 16 30 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 LS Contribution 262.51 15.07 3.96 3.96 Total: -1.00 -28.09 262.51 -8.80 -36.89 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.36 Total: 3.24 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -3.11 Total: -27.30 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: -0.26 Total: -30.48 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.09 -8.80 -36.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260774559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.883 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds