Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47199 * 264.56273 * 3 2 1 5 5 H 1.48506 * 109.47313 * 24.56151 * 3 2 1 6 6 H 1.48500 * 109.47287 * 144.56395 * 3 2 1 7 7 C 1.37872 * 119.99877 * 179.72067 * 2 1 3 8 8 H 1.08001 * 120.00351 * 354.63819 * 7 2 1 9 9 C 1.50700 * 120.00281 * 174.64032 * 7 2 1 10 10 H 1.09008 * 107.79717 * 338.13213 * 9 7 2 11 11 N 1.47289 * 107.96570 * 94.52841 * 9 7 2 12 12 C 1.34537 * 119.16678 * 121.87462 * 11 9 7 13 13 O 1.21585 * 118.46163 * 179.97438 * 12 11 9 14 14 N 1.33909 * 123.06794 * 0.02562 * 12 11 9 15 15 C 1.39525 * 122.96089 * 0.02562 * 14 12 11 16 16 C 1.38858 * 120.70975 * 179.97438 * 15 14 12 17 17 C 1.38129 * 119.84140 * 180.02562 * 16 15 14 18 18 C 1.38300 * 120.34013 * 359.97438 * 17 16 15 19 19 C 1.38473 * 120.04293 * 0.02562 * 18 17 16 20 20 C 1.37584 * 119.71826 * 359.97438 * 19 18 17 21 21 H 0.97003 * 120.00389 * 0.27685 * 1 2 3 22 22 H 0.96999 * 120.41845 * 301.85477 * 11 9 7 23 23 H 0.96995 * 118.52171 * 179.97438 * 14 12 11 24 24 H 1.08006 * 120.08152 * 359.97438 * 16 15 14 25 25 H 1.07995 * 119.82773 * 180.02562 * 17 16 15 26 26 H 1.08002 * 119.97768 * 179.97438 * 18 17 16 27 27 H 1.07995 * 120.13881 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6115 1.9800 -1.3938 5 1 1.3938 2.6831 0.5820 6 1 3.4845 1.4760 0.8117 7 6 2.0045 -1.1940 0.0058 8 1 1.4680 -2.1269 0.0978 9 6 3.5065 -1.1976 -0.1161 10 1 3.8056 -0.2563 -0.5775 11 7 4.0725 -1.2371 1.2432 12 6 4.8926 -2.2481 1.5827 13 8 5.3530 -2.2678 2.7079 14 7 5.2264 -3.2330 0.7391 15 6 4.7544 -3.3020 -0.5721 16 6 5.1314 -4.3451 -1.4075 17 6 4.6538 -4.3954 -2.7026 18 6 3.8014 -3.4124 -3.1715 19 6 3.4224 -2.3701 -2.3424 20 6 3.8969 -2.3179 -1.0520 21 1 -0.4851 0.8400 -0.0041 22 1 3.8569 -0.5428 1.8853 23 1 5.8237 -3.9296 1.0535 24 1 5.7972 -5.1148 -1.0458 25 1 4.9468 -5.2069 -3.3521 26 1 3.4318 -3.4573 -4.1854 27 1 2.7572 -1.6014 -2.7071 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260785005.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = -4.627944 kcal Electronic energy + Delta-G solvation = -14376.928830 eV Core-core repulsion = 11906.290422 eV Total energy + Delta-G solvation = -2470.638408 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41668 -38.10229 -35.04625 -34.38638 -32.31818 -30.67001 -29.14639 -27.06805 -23.40722 -22.38175 -21.77919 -18.95966 -17.87864 -17.33042 -16.77912 -15.47598 -15.15506 -14.93084 -14.14685 -13.92199 -13.78619 -13.05187 -13.01385 -12.58435 -12.32291 -11.39797 -11.17674 -11.06538 -10.59092 -10.29170 -10.25207 -9.88647 -9.55602 -8.96531 -8.50855 -8.09238 -7.25065 -6.39515 -4.45803 1.78052 1.83930 3.07765 3.17348 3.19260 3.41839 3.74393 4.12187 4.32734 4.36810 5.03997 5.20516 5.32038 5.50104 5.76997 5.85120 6.09569 6.39480 6.47386 6.56955 6.59610 6.93850 7.10509 7.28759 7.39283 7.45878 7.83953 8.15806 8.40571 8.70322 9.12469 9.20834 10.71666 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.013347 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.190983 B = 2097.271700 C = 2871.391487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.082 3.918 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.250 3.750 10 H 0.047 0.953 11 N -0.707 5.707 12 C 0.698 3.302 13 O -0.618 6.618 14 N -0.667 5.667 15 C 0.157 3.843 16 C -0.170 4.170 17 C -0.101 4.101 18 C -0.154 4.154 19 C -0.056 4.056 20 C -0.087 4.087 21 H 0.270 0.730 22 H 0.415 0.585 23 H 0.413 0.587 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -4.248 -6.138 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.124 4.124 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.098 0.902 9 C 0.149 3.851 10 H 0.065 0.935 11 N -0.365 5.365 12 C 0.397 3.603 13 O -0.499 6.499 14 N -0.313 5.313 15 C 0.060 3.940 16 C -0.192 4.192 17 C -0.120 4.120 18 C -0.174 4.174 19 C -0.075 4.075 20 C -0.091 4.091 21 H 0.081 0.919 22 H 0.255 0.745 23 H 0.250 0.750 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.848 -4.036 -5.618 10.461 hybrid contribution 0.311 0.793 0.370 0.928 sum 8.159 -3.243 -5.249 10.229 Atomic orbital electron populations 1.69881 1.06358 1.27745 1.47061 1.25155 0.94852 0.99066 0.93361 0.86936 0.80280 0.83501 0.79341 1.19551 1.20827 1.18839 1.21169 0.88024 0.95333 1.51583 0.90187 1.18068 0.94711 0.92787 0.79499 0.93542 1.46689 1.47179 1.25655 1.16964 1.15897 0.79998 0.80797 0.83559 1.90906 1.60017 1.79213 1.19792 1.42466 1.50537 1.27556 1.10703 1.17838 0.95710 0.95964 0.84497 1.20515 1.05167 0.98836 0.94662 1.20752 0.97804 0.98640 0.94766 1.21029 1.00612 0.95792 0.99940 1.20613 0.97038 0.98117 0.91763 1.19611 0.97105 0.96724 0.95667 0.91933 0.74490 0.75043 0.86312 0.86403 0.86250 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.53 13.96 55.43 0.77 -23.76 15 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 15 3 Si 0.87 19.38 26.73 -169.99 -4.54 14.83 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.26 -5.61 6.79 56.52 0.38 -5.23 15 7 C -0.52 -13.49 8.60 -34.44 -0.30 -13.78 15 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 15 9 C 0.25 5.62 2.78 -69.60 -0.19 5.42 15 10 H 0.05 1.03 5.45 -51.92 -0.28 0.75 15 11 N -0.71 -15.78 5.29 -60.53 -0.32 -16.10 15 12 C 0.70 15.25 8.60 -87.91 -0.76 14.49 15 13 O -0.62 -14.82 17.91 5.29 0.09 -14.73 15 14 N -0.67 -12.31 5.27 -14.55 -0.08 -12.39 15 15 C 0.16 2.85 6.66 -83.82 -0.56 2.30 15 16 C -0.17 -2.52 9.90 -39.39 -0.39 -2.91 15 17 C -0.10 -1.38 10.03 -39.60 -0.40 -1.78 15 18 C -0.15 -2.29 10.06 -39.47 -0.40 -2.69 15 19 C -0.06 -1.02 9.33 -39.73 -0.37 -1.39 15 20 C -0.09 -1.76 5.30 -104.35 -0.55 -2.31 15 21 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 22 H 0.41 9.11 8.54 -40.82 -0.35 8.76 15 23 H 0.41 6.37 8.69 -40.82 -0.35 6.02 15 24 H 0.12 1.41 8.06 -52.48 -0.42 0.99 15 25 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.02 15 27 H 0.13 2.42 8.04 -52.49 -0.42 1.99 15 LS Contribution 238.14 15.07 3.59 3.59 Total: -1.00 -29.96 238.14 -6.74 -36.71 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -2.25 Total: 12.44 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -4.01 Total: -0.60 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.38 Total: -52.24 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.54 Total: 14.83 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.96 -6.74 -36.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260785005.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.081 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds