Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47213 * 270.00598 * 3 2 1 5 5 H 1.48505 * 109.46925 * 30.00549 * 3 2 1 6 6 H 1.48497 * 109.46966 * 150.00354 * 3 2 1 7 7 C 1.40135 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99518 * 179.97438 * 7 2 1 9 9 C 1.41312 * 119.99931 * 359.97438 * 7 2 1 10 10 N 1.33925 * 118.43003 * 359.97438 * 9 7 2 11 11 C 1.31337 * 122.16800 * 179.67046 * 10 9 7 12 12 C 1.41030 * 118.29662 * 0.61314 * 11 10 9 13 13 C 1.39825 * 122.75454 * 179.71491 * 12 11 10 14 14 C 1.36481 * 119.38088 * 179.72056 * 13 12 11 15 15 C 1.39401 * 121.63744 * 0.02562 * 14 13 12 16 16 F 1.35095 * 119.17128 * 180.02562 * 15 14 13 17 17 C 1.36496 * 121.65389 * 359.97438 * 15 14 13 18 18 C 1.40446 * 119.31221 * 0.02562 * 17 15 14 19 19 N 1.33030 * 118.42870 * 180.02562 * 9 7 2 20 20 H 0.97000 * 119.99525 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.85479 * 180.32548 * 11 10 9 22 22 H 1.08000 * 120.30301 * 359.69539 * 13 12 11 23 23 H 1.07997 * 119.18037 * 179.97438 * 14 13 12 24 24 H 1.07996 * 120.34210 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 1.4381 2.6527 0.7002 6 1 3.5382 1.4401 0.7000 7 6 2.0073 -1.2136 -0.0005 8 1 3.0872 -1.2136 -0.0010 9 6 1.3007 -2.4374 -0.0005 10 7 -0.0381 -2.4007 0.0005 11 6 -0.7676 -3.4928 -0.0058 12 6 -0.1063 -4.7384 -0.0006 13 6 -0.7903 -5.9580 -0.0008 14 6 -0.0805 -7.1237 -0.0014 15 6 1.3135 -7.1311 -0.0014 16 9 1.9657 -8.3142 -0.0025 17 6 2.0359 -5.9730 -0.0013 18 6 1.3608 -4.7415 -0.0006 19 7 1.9971 -3.5708 -0.0005 20 1 -0.4849 0.8401 0.0004 21 1 -1.8462 -3.4384 -0.0101 22 1 -1.8701 -5.9772 0.0000 23 1 -0.6121 -8.0638 -0.0011 24 1 3.1155 -6.0034 -0.0017 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260791396.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = -4.816448 kcal Electronic energy + Delta-G solvation = -13502.094082 eV Core-core repulsion = 10907.987195 eV Total energy + Delta-G solvation = -2594.106887 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.055 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.90783 -41.13470 -37.95229 -35.48538 -34.49516 -31.48161 -31.20457 -28.33561 -24.97183 -24.18824 -22.89498 -20.53386 -18.82108 -18.43810 -17.52940 -16.83015 -16.58068 -16.43742 -15.71691 -15.12258 -14.95926 -14.43868 -14.09658 -13.61915 -13.16607 -13.10435 -12.82620 -12.53928 -12.42812 -11.99013 -11.73254 -11.17764 -11.04546 -9.63048 -9.40777 -9.26268 -8.60156 -6.83639 -0.30095 0.18081 1.33626 1.38346 1.51536 1.54955 2.14853 2.18544 2.79408 3.27359 3.73045 3.83437 3.91118 4.02117 4.17056 4.27626 4.56536 4.83430 4.92956 5.07733 5.23874 5.31136 5.41627 5.60595 5.99584 6.06113 6.34622 6.44901 7.05103 8.07670 8.19628 Molecular weight = 218.06amu Principal moments of inertia in cm(-1) A = 0.063247 B = 0.007506 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.604154 B = 3729.239769 C = 4162.001517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.021 3.979 3 Si 1.004 2.996 4 H -0.257 1.257 5 H -0.255 1.255 6 H -0.258 1.258 7 C -0.405 4.405 8 H 0.092 0.908 9 C 0.358 3.642 10 N -0.515 5.515 11 C 0.187 3.813 12 C -0.299 4.299 13 C 0.012 3.988 14 C -0.236 4.236 15 C 0.154 3.846 16 F -0.144 7.144 17 C -0.223 4.223 18 C 0.201 3.799 19 N -0.652 5.652 20 H 0.293 0.707 21 H 0.189 0.811 22 H 0.174 0.826 23 H 0.160 0.840 24 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 -4.030 -0.014 5.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.205 4.205 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.179 1.179 6 H -0.182 1.182 7 C -0.438 4.438 8 H 0.110 0.890 9 C 0.125 3.875 10 N -0.228 5.228 11 C 0.001 3.999 12 C -0.307 4.307 13 C -0.009 4.009 14 C -0.256 4.256 15 C 0.132 3.868 16 F -0.123 7.123 17 C -0.245 4.245 18 C 0.063 3.937 19 N -0.377 5.377 20 H 0.104 0.896 21 H 0.206 0.794 22 H 0.191 0.809 23 H 0.178 0.822 24 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.524 -2.902 -0.005 4.565 hybrid contribution 0.319 -0.467 -0.008 0.565 sum -3.205 -3.369 -0.013 4.650 Atomic orbital electron populations 1.70128 1.08910 1.30706 1.24656 1.27202 0.96104 1.04797 0.92392 0.84878 0.78775 0.74150 0.79985 1.18155 1.17902 1.18205 1.19994 0.95393 0.89050 1.39335 0.88992 1.20293 0.86297 0.92000 0.88906 1.68959 1.07537 1.30706 1.15597 1.24162 1.01049 0.86752 0.87959 1.20580 0.94601 0.97276 1.18241 1.20960 1.00917 0.88927 0.90059 1.20724 0.90754 1.00819 1.13274 1.17431 0.91286 0.79395 0.98713 1.91446 1.82025 1.45131 1.93699 1.20293 0.99982 0.90056 1.14179 1.20020 0.90627 0.92490 0.90561 1.69176 1.39008 0.97822 1.31655 0.89556 0.79437 0.80912 0.82195 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -35.71 11.35 21.85 0.25 -35.46 14 2 C 0.02 1.02 5.50 85.33 0.47 1.49 14 3 Si 1.00 35.58 29.56 68.60 2.03 37.61 14 4 H -0.26 -8.76 7.11 99.48 0.71 -8.05 14 5 H -0.26 -8.28 7.11 99.48 0.71 -7.57 14 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 14 7 C -0.40 -22.22 9.34 23.49 0.22 -22.00 14 8 H 0.09 4.94 7.85 -2.91 -0.02 4.92 14 9 C 0.36 20.59 7.34 135.07 0.99 21.58 14 10 N -0.51 -27.50 7.66 -192.89 -1.48 -28.97 14 11 C 0.19 8.20 11.20 85.45 0.96 9.16 14 12 C -0.30 -12.78 5.89 -20.00 -0.12 -12.89 14 13 C 0.01 0.37 9.84 22.24 0.22 0.59 14 14 C -0.24 -7.24 9.88 22.14 0.22 -7.03 14 15 C 0.15 5.64 7.21 22.14 0.16 5.80 14 16 F -0.14 -4.90 17.23 44.97 0.77 -4.13 14 17 C -0.22 -9.78 10.01 22.40 0.22 -9.55 14 18 C 0.20 10.05 6.77 41.68 0.28 10.33 14 19 N -0.65 -37.10 10.37 -184.06 -1.91 -39.00 14 20 H 0.29 12.60 8.29 -92.71 -0.77 11.84 14 21 H 0.19 6.24 8.06 -2.91 -0.02 6.22 14 22 H 0.17 3.70 8.06 -2.91 -0.02 3.68 14 23 H 0.16 3.65 8.06 -2.91 -0.02 3.63 14 24 H 0.12 5.34 8.06 -2.91 -0.02 5.31 14 Total: -1.00 -65.44 228.83 4.52 -60.92 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.24 Total: 11.55 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 3.62 Total: -2.52 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.14 Total: -103.44 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.77 Total: -4.13 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Total: -65.44 4.52 -60.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791396.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.105 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds