Wall clock time and date at job start Mon Mar 30 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00184 * 2 1 4 4 H 1.48491 * 109.47090 * 239.99744 * 3 2 1 5 5 H 1.48499 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47241 * 119.99658 * 3 2 1 7 7 C 1.37881 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46815 * 180.02562 * 9 7 2 11 11 C 1.34969 * 126.42152 * 84.97960 * 10 9 7 12 12 N 1.33630 * 108.66252 * 179.97438 * 11 10 9 13 13 C 1.32607 * 109.19676 * 359.97438 * 12 11 10 14 14 C 1.40825 * 132.31641 * 180.02562 * 13 12 11 15 15 C 1.36202 * 119.44841 * 179.97438 * 14 13 12 16 16 C 1.40097 * 119.75618 * 359.97438 * 15 14 13 17 17 C 1.35853 * 120.21640 * 0.02562 * 16 15 14 18 18 O 1.35448 * 119.76086 * 179.97438 * 17 16 15 19 19 N 1.36635 * 120.48585 * 0.02562 * 17 16 15 20 20 H 0.96996 * 120.00367 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47213 * 60.00141 * 9 7 2 22 22 H 1.09001 * 109.47126 * 299.99730 * 9 7 2 23 23 H 1.07997 * 125.66682 * 0.02562 * 11 10 9 24 24 H 1.07998 * 120.27250 * 359.69377 * 14 13 12 25 25 H 1.08002 * 120.11949 * 179.97438 * 15 14 13 26 26 H 1.07998 * 119.89185 * 179.97438 * 16 15 14 27 27 H 0.96705 * 113.99887 * 270.02094 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0018 11 6 2.8225 -4.1914 1.0844 12 7 3.6223 -5.1824 0.6795 13 6 3.5560 -5.2843 -0.6410 14 6 4.1864 -6.1472 -1.5581 15 6 3.9222 -6.0194 -2.8882 16 6 3.0287 -5.0342 -3.3281 17 6 2.4271 -4.2079 -2.4330 18 8 1.5652 -3.2582 -2.8685 19 7 2.6861 -4.3272 -1.0967 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.6739 -3.8803 2.1079 24 1 4.8769 -6.9011 -1.2101 25 1 4.3999 -6.6752 -3.6010 26 1 2.8180 -4.9306 -4.3822 27 1 1.9840 -2.4110 -3.0732 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260791412.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:50 Heat of formation + Delta-G solvation = 18.096735 kcal Electronic energy + Delta-G solvation = -14228.818454 eV Core-core repulsion = 11759.165462 eV Total energy + Delta-G solvation = -2469.652992 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.69589 -39.51609 -37.31964 -35.42502 -34.02040 -32.06587 -30.44258 -28.17073 -25.23521 -24.39131 -23.36808 -22.01315 -19.37166 -18.66536 -18.20768 -17.49980 -16.96100 -16.53276 -16.26988 -15.55645 -14.78105 -14.46538 -14.25690 -13.83169 -13.52436 -13.10904 -12.77476 -12.74623 -12.39908 -12.13102 -12.00428 -11.91972 -11.45827 -11.08332 -10.61788 -9.68264 -8.57711 -8.17425 -6.38397 -0.22009 0.42604 1.38445 1.41108 1.49326 1.58176 1.91304 2.38542 2.56324 3.03366 3.09467 3.41135 3.74808 4.05876 4.26043 4.52164 4.58226 4.74607 4.82728 5.09635 5.24001 5.25457 5.52378 5.59829 5.67455 5.73909 6.06181 6.20477 6.45611 6.70953 6.92716 7.30766 8.85104 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037472 B = 0.009231 C = 0.008353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.048579 B = 3032.573272 C = 3351.397896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.100 3.900 10 C -0.034 4.034 11 C -0.004 4.004 12 N -0.524 5.524 13 C 0.202 3.798 14 C -0.107 4.107 15 C -0.068 4.068 16 C -0.154 4.154 17 C 0.249 3.751 18 O -0.484 6.484 19 N -0.388 5.388 20 H 0.268 0.732 21 H 0.021 0.979 22 H 0.015 0.985 23 H 0.181 0.819 24 H 0.175 0.825 25 H 0.197 0.803 26 H 0.189 0.811 27 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -8.753 -8.995 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.065 0.935 9 C 0.061 3.939 10 C -0.146 4.146 11 C -0.152 4.152 12 N -0.246 5.246 13 C -0.041 4.041 14 C -0.127 4.127 15 C -0.092 4.092 16 C -0.176 4.176 17 C 0.103 3.897 18 O -0.293 6.293 19 N -0.071 5.071 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.033 0.967 23 H 0.198 0.802 24 H 0.193 0.807 25 H 0.214 0.786 26 H 0.206 0.794 27 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.381 -9.452 -8.424 14.655 hybrid contribution -0.332 2.141 0.060 2.168 sum 7.049 -7.311 -8.364 13.156 Atomic orbital electron populations 1.70058 1.07575 1.28208 1.50339 1.25800 0.95608 1.02640 0.94227 0.85512 0.78269 0.78247 0.79074 1.19062 1.20481 1.19834 1.21168 0.92519 0.90884 1.52285 0.93506 1.17534 0.91168 0.88019 0.97137 1.22123 1.06172 1.00916 0.85407 1.22311 0.97810 0.95738 0.99333 1.70640 1.24654 1.21613 1.07661 1.21671 0.96630 0.94392 0.91413 1.20669 1.01645 0.99000 0.91392 1.21407 0.95736 0.97023 0.94986 1.21267 0.98365 0.97578 1.00348 1.19156 0.94463 0.95550 0.80521 1.84785 1.35020 1.25406 1.84064 1.43776 1.31129 1.25559 1.06668 0.92347 0.96049 0.96710 0.80210 0.80749 0.78602 0.79416 0.72764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.89 13.29 21.45 0.28 -53.60 15 2 C 0.02 0.92 5.46 84.66 0.46 1.39 15 3 Si 0.96 42.94 29.54 68.60 2.03 44.97 15 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 7 C -0.53 -29.65 9.09 25.60 0.23 -29.41 15 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 15 9 C 0.10 5.38 5.16 29.10 0.15 5.53 15 10 C -0.03 -1.62 6.23 40.98 0.26 -1.37 15 11 C 0.00 -0.19 11.74 83.67 0.98 0.79 15 12 N -0.52 -22.76 11.32 -194.39 -2.20 -24.96 15 13 C 0.20 7.80 7.81 134.05 1.05 8.84 15 14 C -0.11 -2.81 10.10 22.43 0.23 -2.58 15 15 C -0.07 -1.31 10.05 22.25 0.22 -1.09 15 16 C -0.15 -3.60 9.91 22.17 0.22 -3.38 15 17 C 0.25 8.64 7.63 83.39 0.64 9.27 15 18 O -0.48 -17.46 11.57 -87.46 -1.01 -18.47 15 19 N -0.39 -16.24 2.96 -449.87 -1.33 -17.57 15 20 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 21 H 0.02 1.21 6.59 -2.39 -0.02 1.20 15 22 H 0.01 0.85 8.14 -2.39 -0.02 0.83 15 23 H 0.18 7.61 8.06 -2.91 -0.02 7.59 15 24 H 0.18 3.47 8.06 -2.91 -0.02 3.45 15 25 H 0.20 1.65 8.06 -2.91 -0.02 1.63 15 26 H 0.19 2.90 8.06 -2.91 -0.02 2.87 15 27 H 0.41 12.68 9.06 -74.05 -0.67 12.01 15 Total: -1.00 -71.52 245.25 2.73 -68.79 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.53 Total: 12.85 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.44 Total: -12.00 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -3.25 Total: -96.13 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.01 Total: -18.47 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.52 2.73 -68.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791412.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.884 kcal (2) G-P(sol) polarization free energy of solvation -71.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds