Wall clock time and date at job start Mon Mar 30 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99805 * 2 1 4 4 H 1.48509 * 109.46837 * 264.72888 * 3 2 1 5 5 H 1.48498 * 109.47441 * 24.72515 * 3 2 1 6 6 H 1.48499 * 109.46954 * 144.73045 * 3 2 1 7 7 C 1.37877 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00297 * 3.71166 * 7 2 1 9 9 C 1.50699 * 119.99648 * 183.71150 * 7 2 1 10 10 H 1.08997 * 110.28197 * 337.50949 * 9 7 2 11 11 C 1.53297 * 110.32413 * 215.38726 * 9 7 2 12 12 C 1.44546 * 115.20603 * 147.58011 * 11 9 7 13 13 C 1.55155 * 110.68243 * 63.92456 * 12 11 9 14 14 S 1.79176 * 109.59974 * 285.49588 * 13 12 11 15 15 O 1.42104 * 107.95856 * 333.97309 * 14 13 12 16 16 O 1.42108 * 107.86605 * 204.63348 * 14 13 12 17 17 C 1.82285 * 105.79354 * 89.32645 * 14 13 12 18 18 C 1.51267 * 110.46008 * 99.72475 * 9 7 2 19 19 H 0.97005 * 120.00186 * 0.02562 * 1 2 3 20 20 H 1.08996 * 108.33873 * 26.08715 * 11 9 7 21 21 H 1.08999 * 108.19206 * 268.95304 * 11 9 7 22 22 H 1.09005 * 109.22853 * 184.22345 * 12 11 9 23 23 H 1.09000 * 109.22482 * 303.62729 * 12 11 9 24 24 H 1.09000 * 109.44508 * 45.56939 * 13 12 11 25 25 H 1.08996 * 109.44643 * 165.47958 * 13 12 11 26 26 H 1.09001 * 109.14699 * 198.62928 * 17 14 13 27 27 H 1.08997 * 109.10229 * 79.44520 * 17 14 13 28 28 H 1.09004 * 109.45462 * 344.19830 * 18 9 7 29 29 H 1.09004 * 109.45649 * 104.13357 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6080 1.9821 -1.3943 5 1 1.3953 2.6823 0.5856 6 1 3.4865 1.4749 0.8084 7 6 2.0045 -1.1941 0.0005 8 1 1.4663 -2.1284 -0.0596 9 6 3.5092 -1.1954 0.0850 10 1 3.9074 -0.2391 -0.2539 11 6 4.0885 -2.3406 -0.7533 12 6 5.3737 -2.0720 -1.3578 13 6 6.4582 -1.8603 -0.2685 14 16 6.2426 -0.2512 0.4896 15 8 5.5973 0.5942 -0.4528 16 8 7.4978 0.1526 1.0197 17 6 5.1003 -0.5099 1.8864 18 6 3.9590 -1.4797 1.5010 19 1 -0.4851 0.8401 -0.0004 20 1 3.3794 -2.5779 -1.5463 21 1 4.1879 -3.2158 -0.1112 22 1 5.6574 -2.9151 -1.9878 23 1 5.3011 -1.1739 -1.9713 24 1 6.3649 -2.6358 0.4918 25 1 7.4465 -1.9169 -0.7245 26 1 4.6715 0.4483 2.1797 27 1 5.6542 -0.9262 2.7278 28 1 3.1199 -1.3421 2.1830 29 1 4.3169 -2.5070 1.5689 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260814631.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:28 Heat of formation + Delta-G solvation = -97.515864 kcal Electronic energy + Delta-G solvation = -14027.700370 eV Core-core repulsion = 11656.185240 eV Total energy + Delta-G solvation = -2371.515130 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.35391 -37.58289 -36.99998 -34.80215 -33.70864 -30.59892 -27.70280 -25.29220 -22.90640 -21.17913 -19.54781 -19.21365 -17.73521 -17.36787 -16.68980 -16.15832 -15.42664 -15.12220 -14.85400 -14.50906 -14.24856 -13.76511 -13.51932 -13.11239 -12.97016 -12.88401 -12.79468 -12.41876 -12.36339 -11.71342 -11.55045 -11.27192 -11.02632 -10.89592 -10.78632 -10.58996 -8.28008 -6.28784 -0.85031 1.33437 1.41593 1.52640 1.96705 2.36334 2.76914 3.04797 3.09774 3.69886 3.81230 3.93996 4.11163 4.21696 4.51242 4.67661 4.76487 4.78945 4.90397 5.07703 5.14144 5.36983 5.44500 5.68019 5.76360 5.82904 6.36869 6.81596 7.37723 8.87913 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037436 B = 0.014336 C = 0.012438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.768023 B = 1952.591404 C = 2250.641929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.018 3.982 3 Si 0.915 3.085 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.233 1.233 7 C -0.493 4.493 8 H 0.043 0.957 9 C -0.057 4.057 10 H 0.073 0.927 11 C -0.132 4.132 12 C -0.098 4.098 13 C -0.597 4.597 14 S 2.402 3.598 15 O -0.982 6.982 16 O -0.992 6.992 17 C -0.597 4.597 18 C -0.100 4.100 19 H 0.263 0.737 20 H 0.053 0.947 21 H 0.082 0.918 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.170 0.830 25 H 0.162 0.838 26 H 0.119 0.881 27 H 0.163 0.837 28 H 0.064 0.936 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.261 -5.470 2.118 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.179 4.179 3 Si 0.741 3.259 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.156 1.156 7 C -0.531 4.531 8 H 0.062 0.938 9 C -0.077 4.077 10 H 0.090 0.910 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.730 4.730 14 S 2.591 3.409 15 O -0.979 6.979 16 O -0.989 6.989 17 C -0.728 4.728 18 C -0.138 4.138 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.101 0.899 22 H 0.130 0.870 23 H 0.085 0.915 24 H 0.188 0.812 25 H 0.180 0.820 26 H 0.137 0.863 27 H 0.181 0.819 28 H 0.083 0.917 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.518 -4.566 1.878 15.335 hybrid contribution -0.755 0.531 0.155 0.936 sum 13.764 -4.035 2.033 14.486 Atomic orbital electron populations 1.70025 1.07873 1.27624 1.53583 1.25732 0.95170 1.02104 0.94896 0.86261 0.79544 0.80229 0.79821 1.20695 1.22250 1.15591 1.21145 0.90996 0.92772 1.48156 0.93825 1.19962 0.95638 0.98350 0.93704 0.90955 1.20541 0.96232 0.99266 1.00888 1.20171 0.92063 1.04715 0.96697 1.30344 1.09676 1.21078 1.11890 1.08031 0.75082 0.79920 0.77869 1.93486 1.76199 1.66006 1.62246 1.93476 1.42264 1.82389 1.80805 1.30634 1.13385 1.10148 1.18646 1.22043 0.95185 0.98072 0.98527 0.92819 0.92859 0.89949 0.86953 0.91487 0.81237 0.82025 0.86290 0.81927 0.91731 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 15 2 C 0.02 1.03 5.47 84.65 0.46 1.50 15 3 Si 0.92 46.53 26.69 68.60 1.83 48.36 15 4 H -0.28 -14.68 7.11 99.48 0.71 -13.97 15 5 H -0.30 -14.85 7.11 99.48 0.71 -14.15 15 6 H -0.23 -10.67 5.06 99.48 0.50 -10.17 15 7 C -0.49 -26.66 8.47 25.60 0.22 -26.44 15 8 H 0.04 2.57 8.06 -2.91 -0.02 2.55 15 9 C -0.06 -2.38 1.54 -12.01 -0.02 -2.40 15 10 H 0.07 3.19 1.66 -2.39 0.00 3.19 15 11 C -0.13 -4.27 4.55 28.14 0.13 -4.14 15 12 C -0.10 -2.50 5.34 28.78 0.15 -2.35 15 13 C -0.60 -12.03 5.83 72.72 0.42 -11.61 15 14 S 2.40 71.87 4.89 -56.49 -0.28 71.59 15 15 O -0.98 -38.91 13.40 -127.29 -1.71 -40.61 15 16 O -0.99 -33.41 18.05 -127.29 -2.30 -35.71 15 17 C -0.60 -16.78 6.29 72.54 0.46 -16.33 15 18 C -0.10 -3.28 5.23 30.59 0.16 -3.12 15 19 H 0.26 15.62 8.31 -92.70 -0.77 14.85 15 20 H 0.05 1.94 7.75 -2.39 -0.02 1.92 15 21 H 0.08 2.15 6.72 -2.39 -0.02 2.13 15 22 H 0.11 2.11 8.14 -2.38 -0.02 2.09 15 23 H 0.07 2.00 7.11 -2.39 -0.02 1.98 15 24 H 0.17 2.16 7.68 -2.50 -0.02 2.14 15 25 H 0.16 2.38 8.14 -2.51 -0.02 2.36 15 26 H 0.12 3.68 7.03 -2.39 -0.02 3.66 15 27 H 0.16 3.07 8.14 -2.39 -0.02 3.05 15 28 H 0.06 2.42 7.68 -2.38 -0.02 2.40 15 29 H 0.10 2.49 6.40 -2.38 -0.02 2.48 15 Total: -1.00 -74.63 231.81 0.77 -73.85 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.94 Total: 6.51 kcal Atomic # 6 Polarization: -66.88 SS G_CDS: 1.98 Total: -64.89 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.10 kcal Atomic # 8 Polarization: -72.32 SS G_CDS: -4.00 Total: -76.32 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.83 Total: 48.36 kcal Atomic # 16 Polarization: 71.87 SS G_CDS: -0.28 Total: 71.59 kcal Total: -74.63 0.77 -73.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814631.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.664 kcal (2) G-P(sol) polarization free energy of solvation -74.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds