Wall clock time and date at job start Mon Mar 30 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86791 * 120.00385 * 2 1 4 4 H 1.48493 * 109.47545 * 239.99832 * 3 2 1 5 5 H 1.48504 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47141 * 119.99735 * 3 2 1 7 7 C 1.40084 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99877 * 179.97438 * 7 2 1 9 9 C 1.39870 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.39220 * 125.70138 * 179.71693 * 9 7 2 11 11 C 1.40693 * 107.57623 * 180.25824 * 10 9 7 12 12 C 1.41190 * 107.36297 * 359.97438 * 11 10 9 13 13 C 1.38680 * 119.61648 * 179.97438 * 12 11 10 14 14 C 1.38280 * 120.27311 * 0.03637 * 13 12 11 15 15 C 1.38830 * 120.75150 * 359.96493 * 14 13 12 16 16 O 1.36128 * 119.87583 * 179.97438 * 15 14 13 17 17 C 1.38784 * 120.25668 * 0.02562 * 15 14 13 18 18 N 1.39324 * 120.25821 * 179.97438 * 17 15 14 19 19 N 1.38335 * 125.70269 * 0.02562 * 9 7 2 20 20 H 0.96998 * 125.64035 * 359.70142 * 19 9 7 21 21 H 0.97002 * 119.99386 * 0.02562 * 1 2 3 22 22 H 1.08009 * 126.20945 * 0.23223 * 10 9 7 23 23 H 1.07998 * 119.86300 * 180.02562 * 13 12 11 24 24 H 1.07998 * 119.62547 * 179.97438 * 14 13 12 25 25 H 0.96698 * 114.00125 * 270.02706 * 16 15 14 26 26 H 0.96994 * 120.00256 * 180.02562 * 18 17 15 27 27 H 0.97004 * 120.00236 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6962 1.2126 7 6 2.0085 -1.2132 0.0005 8 1 3.0885 -1.2133 0.0001 9 6 1.3091 -2.4245 0.0005 10 6 1.8819 -3.6934 -0.0045 11 6 0.8342 -4.6324 -0.0086 12 6 -0.3790 -3.9102 -0.0053 13 6 -1.5846 -4.5955 -0.0088 14 6 -1.6004 -5.9782 -0.0147 15 6 -0.4155 -6.7017 -0.0180 16 8 -0.4519 -8.0625 -0.0233 17 6 0.8060 -6.0430 -0.0148 18 7 1.9952 -6.7690 -0.0175 19 7 -0.0674 -2.5619 -0.0005 20 1 -0.7081 -1.8336 0.0028 21 1 -0.4849 0.8401 -0.0004 22 1 2.9387 -3.9164 -0.0056 23 1 -2.5149 -4.0471 -0.0067 24 1 -2.5453 -6.5013 -0.0169 25 1 -0.4625 -8.4591 0.8586 26 1 2.8468 -6.3048 -0.0149 27 1 1.9714 -7.7388 -0.0221 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260834227.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:55 Heat of formation + Delta-G solvation = -11.140921 kcal Electronic energy + Delta-G solvation = -13990.567218 eV Core-core repulsion = 11519.646387 eV Total energy + Delta-G solvation = -2470.920832 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74632 -37.58075 -34.78287 -33.63934 -32.89987 -29.40667 -28.39692 -26.49022 -25.00490 -21.06292 -20.83109 -19.16646 -17.90110 -17.18598 -16.49065 -15.76129 -15.17991 -14.51368 -14.17291 -13.47788 -13.15736 -12.90429 -12.41020 -11.92581 -11.68371 -11.47977 -11.21967 -10.86748 -10.70586 -10.65736 -10.30414 -9.77034 -9.57628 -9.24607 -7.69626 -7.14000 -7.09407 -6.05306 -4.43565 2.39430 2.69484 2.91546 2.93835 2.97268 3.73770 3.89446 4.69176 4.83240 4.96346 5.19391 5.29412 5.96509 6.24148 6.50078 6.66625 6.79241 6.99761 7.03604 7.20673 7.43064 7.54279 7.65356 7.79980 7.89022 8.18535 8.44140 8.51162 8.62221 8.70042 8.90405 9.47959 9.91920 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.060465 B = 0.007620 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.970075 B = 3673.632783 C = 4124.217547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.069 3.931 3 Si 0.935 3.065 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.097 0.903 9 C 0.283 3.717 10 C -0.368 4.368 11 C -0.086 4.086 12 C 0.065 3.935 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.025 4.025 16 O -0.499 6.499 17 C 0.189 3.811 18 N -0.875 5.875 19 N -0.581 5.581 20 H 0.424 0.576 21 H 0.291 0.709 22 H 0.110 0.890 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.357 0.643 26 H 0.393 0.607 27 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -3.683 1.525 4.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.146 4.146 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.115 0.885 9 C 0.171 3.829 10 C -0.391 4.391 11 C -0.094 4.094 12 C -0.044 4.044 13 C -0.176 4.176 14 C -0.161 4.161 15 C -0.075 4.075 16 O -0.305 6.305 17 C 0.085 3.915 18 N -0.415 5.415 19 N -0.196 5.196 20 H 0.273 0.727 21 H 0.103 0.897 22 H 0.128 0.872 23 H 0.119 0.881 24 H 0.126 0.874 25 H 0.208 0.792 26 H 0.220 0.780 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.060 -3.280 0.893 3.400 hybrid contribution 0.278 0.754 0.529 0.963 sum 0.339 -2.526 1.423 2.919 Atomic orbital electron populations 1.68752 1.07927 1.30473 1.39662 1.26082 0.94882 1.02319 0.91316 0.85890 0.79548 0.78487 0.80106 1.18695 1.20229 1.18694 1.18969 0.95306 0.88312 1.45052 0.88480 1.17983 0.80793 0.93499 0.90653 1.20183 0.95726 0.90236 1.32931 1.17506 0.94307 0.89796 1.07783 1.18191 0.93908 0.84854 1.07463 1.19462 0.94434 0.92981 1.10686 1.20230 0.96037 0.92724 1.07143 1.17295 0.90815 0.81322 1.18111 1.84940 1.96517 1.17387 1.31648 1.17500 0.85761 0.89377 0.98888 1.41946 1.05369 1.07795 1.86363 1.43247 1.07795 1.04666 1.63862 0.72724 0.89693 0.87231 0.88118 0.87423 0.79154 0.77992 0.78369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.96 10.61 55.56 0.59 -19.37 15 2 C 0.07 1.61 5.50 -17.29 -0.10 1.52 15 3 Si 0.94 17.65 29.56 -169.99 -5.03 12.62 15 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.28 -5.11 7.11 56.52 0.40 -4.71 15 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 7 C -0.44 -11.17 9.31 -38.28 -0.36 -11.53 15 8 H 0.10 2.31 7.85 -52.49 -0.41 1.89 15 9 C 0.28 7.46 6.67 -83.95 -0.56 6.90 15 10 C -0.37 -9.29 10.54 -38.29 -0.40 -9.70 15 11 C -0.09 -2.11 6.08 -106.77 -0.65 -2.75 15 12 C 0.06 1.60 7.23 -83.62 -0.60 0.99 15 13 C -0.15 -3.36 10.05 -39.40 -0.40 -3.75 15 14 C -0.14 -2.89 9.95 -39.35 -0.39 -3.29 15 15 C -0.03 -0.52 6.71 -39.16 -0.26 -0.78 15 16 O -0.50 -8.77 12.73 -20.15 -0.26 -9.02 15 17 C 0.19 4.10 6.82 -83.17 -0.57 3.53 15 18 N -0.87 -15.48 9.06 32.75 0.30 -15.19 15 19 N -0.58 -14.91 5.85 -8.26 -0.05 -14.95 15 20 H 0.42 10.66 6.18 -40.82 -0.25 10.41 15 21 H 0.29 6.31 8.30 -40.82 -0.34 5.97 15 22 H 0.11 2.56 8.03 -52.48 -0.42 2.14 15 23 H 0.10 1.99 8.06 -52.49 -0.42 1.57 15 24 H 0.11 1.93 8.06 -52.49 -0.42 1.51 15 25 H 0.36 4.64 9.07 45.56 0.41 5.06 15 26 H 0.39 6.57 8.54 -40.82 -0.35 6.22 15 27 H 0.39 5.91 8.17 -40.82 -0.33 5.58 15 LS Contribution 240.24 15.07 3.62 3.62 Total: -1.00 -28.09 240.24 -6.44 -34.53 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -1.33 Total: 26.62 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -4.29 Total: -18.86 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.84 Total: -49.51 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.26 Total: -9.02 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.09 -6.44 -34.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260834227.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.392 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds