Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86791 * 120.00385 * 2 1 4 4 H 1.48493 * 109.47545 * 239.99832 * 3 2 1 5 5 H 1.48504 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47141 * 119.99735 * 3 2 1 7 7 C 1.40084 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99877 * 179.97438 * 7 2 1 9 9 C 1.39870 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.39220 * 125.70138 * 179.71693 * 9 7 2 11 11 C 1.40693 * 107.57623 * 180.25824 * 10 9 7 12 12 C 1.41190 * 107.36297 * 359.97438 * 11 10 9 13 13 C 1.38680 * 119.61648 * 179.97438 * 12 11 10 14 14 C 1.38280 * 120.27311 * 0.03637 * 13 12 11 15 15 C 1.38830 * 120.75150 * 359.96493 * 14 13 12 16 16 O 1.36128 * 119.87583 * 179.97438 * 15 14 13 17 17 C 1.38784 * 120.25668 * 0.02562 * 15 14 13 18 18 N 1.39324 * 120.25821 * 179.97438 * 17 15 14 19 19 N 1.38335 * 125.70269 * 0.02562 * 9 7 2 20 20 H 0.96998 * 125.64035 * 359.70142 * 19 9 7 21 21 H 0.97002 * 119.99386 * 0.02562 * 1 2 3 22 22 H 1.08009 * 126.20945 * 0.23223 * 10 9 7 23 23 H 1.07998 * 119.86300 * 180.02562 * 13 12 11 24 24 H 1.07998 * 119.62547 * 179.97438 * 14 13 12 25 25 H 0.96698 * 114.00125 * 270.02706 * 16 15 14 26 26 H 0.96994 * 120.00256 * 180.02562 * 18 17 15 27 27 H 0.97004 * 120.00236 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6962 1.2126 7 6 2.0085 -1.2132 0.0005 8 1 3.0885 -1.2133 0.0001 9 6 1.3091 -2.4245 0.0005 10 6 1.8819 -3.6934 -0.0045 11 6 0.8342 -4.6324 -0.0086 12 6 -0.3790 -3.9102 -0.0053 13 6 -1.5846 -4.5955 -0.0088 14 6 -1.6004 -5.9782 -0.0147 15 6 -0.4155 -6.7017 -0.0180 16 8 -0.4519 -8.0625 -0.0233 17 6 0.8060 -6.0430 -0.0148 18 7 1.9952 -6.7690 -0.0175 19 7 -0.0674 -2.5619 -0.0005 20 1 -0.7081 -1.8336 0.0028 21 1 -0.4849 0.8401 -0.0004 22 1 2.9387 -3.9164 -0.0056 23 1 -2.5149 -4.0471 -0.0067 24 1 -2.5453 -6.5013 -0.0169 25 1 -0.4625 -8.4591 0.8586 26 1 2.8468 -6.3048 -0.0149 27 1 1.9714 -7.7388 -0.0221 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260834227.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = -31.696586 kcal Electronic energy + Delta-G solvation = -13991.458579 eV Core-core repulsion = 11519.646387 eV Total energy + Delta-G solvation = -2471.812192 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.50718 -39.18210 -36.41121 -35.27877 -34.60523 -31.21091 -30.18435 -28.15321 -26.78103 -22.78257 -22.53343 -20.97418 -19.69900 -18.75179 -18.19346 -17.37095 -16.82016 -16.08268 -15.75692 -15.15591 -14.84426 -14.63394 -14.07588 -13.72068 -13.35576 -13.06374 -12.85131 -12.55378 -12.41934 -12.31845 -11.91289 -11.43602 -11.15497 -10.93707 -9.46787 -8.90065 -8.89162 -7.74960 -6.29254 0.68138 1.00583 1.39604 1.39926 1.53197 2.12997 2.16614 3.01497 3.16962 3.29354 3.37693 3.69269 4.33414 4.60924 4.75740 5.00108 5.07678 5.23818 5.34010 5.43853 5.69435 5.79667 5.91062 5.99594 6.14963 6.62681 6.68026 6.74582 7.00605 7.20034 7.26679 7.59829 8.18351 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.060465 B = 0.007620 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.970075 B = 3673.632783 C = 4124.217547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.031 3.969 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.477 4.477 8 H 0.100 0.900 9 C 0.249 3.751 10 C -0.389 4.389 11 C -0.113 4.113 12 C 0.039 3.961 13 C -0.169 4.169 14 C -0.128 4.128 15 C -0.024 4.024 16 O -0.496 6.496 17 C 0.184 3.816 18 N -0.861 5.861 19 N -0.590 5.590 20 H 0.421 0.579 21 H 0.300 0.700 22 H 0.115 0.885 23 H 0.117 0.883 24 H 0.140 0.860 25 H 0.384 0.616 26 H 0.397 0.603 27 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 -4.344 1.637 4.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.182 4.182 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.511 4.511 8 H 0.118 0.882 9 C 0.137 3.863 10 C -0.412 4.412 11 C -0.122 4.122 12 C -0.069 4.069 13 C -0.192 4.192 14 C -0.148 4.148 15 C -0.075 4.075 16 O -0.305 6.305 17 C 0.078 3.922 18 N -0.401 5.401 19 N -0.205 5.205 20 H 0.269 0.731 21 H 0.112 0.888 22 H 0.133 0.867 23 H 0.135 0.865 24 H 0.157 0.843 25 H 0.239 0.761 26 H 0.225 0.775 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.180 -4.005 1.020 4.136 hybrid contribution 0.276 0.737 0.506 0.936 sum 0.096 -3.268 1.526 3.608 Atomic orbital electron populations 1.68780 1.09136 1.31810 1.39199 1.27006 0.95688 1.05369 0.90104 0.84800 0.78219 0.73894 0.80148 1.18310 1.19133 1.18201 1.19268 0.95739 0.89176 1.46889 0.88180 1.18425 0.81472 0.94480 0.91905 1.20362 0.96301 0.90548 1.33955 1.17751 0.94035 0.91178 1.09200 1.18675 0.95233 0.84672 1.08355 1.19733 0.94207 0.93861 1.11379 1.20633 0.97473 0.92199 1.04536 1.17371 0.90387 0.82660 1.17073 1.84866 1.96328 1.15438 1.33878 1.17654 0.87534 0.88721 0.98280 1.41873 1.04527 1.08461 1.85271 1.43263 1.07536 1.05129 1.64559 0.73112 0.88785 0.86666 0.86496 0.84265 0.76139 0.77456 0.76658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.49 10.61 21.86 0.23 -41.25 15 2 C 0.03 1.44 5.50 85.29 0.47 1.91 15 3 Si 1.01 35.85 29.56 68.60 2.03 37.87 15 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 5 H -0.27 -8.94 7.11 99.48 0.71 -8.24 15 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 7 C -0.48 -24.84 9.31 23.11 0.22 -24.62 15 8 H 0.10 4.91 7.85 -2.91 -0.02 4.89 15 9 C 0.25 13.63 6.67 38.75 0.26 13.89 15 10 C -0.39 -20.26 10.54 23.11 0.24 -20.02 15 11 C -0.11 -5.63 6.08 -21.26 -0.13 -5.76 15 12 C 0.04 1.94 7.23 38.94 0.28 2.22 15 13 C -0.17 -7.28 10.05 22.39 0.23 -7.05 15 14 C -0.13 -4.94 9.95 22.42 0.22 -4.72 15 15 C -0.02 -0.93 6.71 22.54 0.15 -0.78 15 16 O -0.50 -15.53 12.73 -95.00 -1.21 -16.73 15 17 C 0.18 7.75 6.82 38.78 0.26 8.02 15 18 N -0.86 -29.00 9.06 -50.31 -0.46 -29.45 15 19 N -0.59 -31.28 5.85 -180.05 -1.05 -32.33 15 20 H 0.42 21.91 6.18 -92.71 -0.57 21.34 15 21 H 0.30 13.00 8.30 -92.71 -0.77 12.24 15 22 H 0.12 5.58 8.03 -2.91 -0.02 5.56 15 23 H 0.12 4.52 8.06 -2.91 -0.02 4.50 15 24 H 0.14 4.43 8.06 -2.91 -0.02 4.40 15 25 H 0.38 8.30 9.07 -74.06 -0.67 7.63 15 26 H 0.40 12.87 8.54 -92.71 -0.79 12.08 15 27 H 0.40 11.19 8.17 -92.70 -0.76 10.44 15 Total: -1.00 -60.65 240.24 0.21 -60.44 By element: Atomic # 1 Polarization: 59.90 SS G_CDS: -1.54 Total: 58.37 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 2.20 Total: -36.91 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -1.28 Total: -103.04 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -1.21 Total: -16.73 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.87 kcal Total: -60.65 0.21 -60.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260834227.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.743 kcal (2) G-P(sol) polarization free energy of solvation -60.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds