Wall clock time and date at job start Mon Mar 30 2020 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08996 * 109.47590 * 299.72113 * 9 7 2 11 11 C 1.53110 * 109.47406 * 179.71019 * 9 7 2 12 12 S 1.81598 * 109.16540 * 181.64069 * 11 9 7 13 13 O 1.42107 * 108.59343 * 303.08870 * 12 11 9 14 14 O 1.42098 * 108.67183 * 171.93628 * 12 11 9 15 15 C 1.81547 * 101.63840 * 57.49513 * 12 11 9 16 16 C 1.53114 * 109.17477 * 302.49619 * 15 12 11 17 17 C 1.50668 * 109.44411 * 58.38174 * 16 15 12 18 18 O 1.20755 * 119.89528 * 118.28687 * 17 16 15 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.52211 * 301.52959 * 11 9 7 21 21 H 1.08992 * 109.52466 * 61.71818 * 11 9 7 22 22 H 1.09000 * 109.52199 * 182.58669 * 15 12 11 23 23 H 1.08997 * 109.57451 * 62.43728 * 15 12 11 24 24 H 1.08999 * 109.47298 * 298.39163 * 16 15 12 25 25 H 1.09000 * 109.48254 * 178.37706 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5610 0.8843 11 6 2.2458 -3.6631 -0.0107 12 16 1.3298 -5.2301 -0.0669 13 8 0.4420 -5.2760 1.0418 14 8 2.2549 -6.2911 -0.2604 15 6 0.3527 -5.0290 -1.5838 16 6 -0.5061 -3.7669 -1.4653 17 6 0.3849 -2.5737 -1.2361 18 8 0.4048 -1.6740 -2.0412 19 1 -0.4850 0.8401 -0.0004 20 1 2.8907 -3.5869 -0.8861 21 1 2.8525 -3.6278 0.8940 22 1 -0.2924 -5.8971 -1.7193 23 1 1.0216 -4.9353 -2.4393 24 1 -1.1941 -3.8731 -0.6266 25 1 -1.0734 -3.6255 -2.3852 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260857702.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:20 Heat of formation + Delta-G solvation = -108.268621 kcal Electronic energy + Delta-G solvation = -13404.298558 eV Core-core repulsion = 10896.484058 eV Total energy + Delta-G solvation = -2507.814499 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 218.045 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.58485 -36.61498 -35.65792 -33.84285 -33.01391 -31.08677 -25.81678 -25.07359 -22.42777 -19.23903 -18.11602 -16.91860 -16.17919 -15.54790 -15.27641 -14.99625 -14.67861 -14.28403 -13.51094 -12.84444 -12.76448 -12.36016 -11.80060 -11.72561 -11.60965 -11.54713 -11.13894 -11.09197 -10.78770 -10.51963 -10.16760 -9.82723 -9.30865 -8.57498 -8.27588 -6.19893 -4.24844 0.40858 3.03441 3.13337 3.27072 3.33517 3.34890 3.98009 4.32344 4.41915 4.72823 4.95773 5.06393 5.33545 5.45239 5.54465 5.66193 5.90794 6.06394 6.29633 6.88246 7.08413 7.72933 7.97242 8.71281 8.83620 9.43751 10.91900 Molecular weight = 218.04amu Principal moments of inertia in cm(-1) A = 0.050191 B = 0.010750 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.737636 B = 2603.964068 C = 2849.427282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.017 3.983 10 H 0.079 0.921 11 C -0.565 4.565 12 S 2.401 3.599 13 O -0.939 6.939 14 O -0.959 6.959 15 C -0.595 4.595 16 C -0.165 4.165 17 C 0.342 3.658 18 O -0.409 6.409 19 H 0.266 0.734 20 H 0.125 0.875 21 H 0.135 0.865 22 H 0.131 0.869 23 H 0.129 0.871 24 H 0.104 0.896 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.615 -7.521 -1.935 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.127 4.127 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.084 0.916 9 C -0.003 4.003 10 H 0.097 0.903 11 C -0.697 4.697 12 S 2.586 3.414 13 O -0.937 6.937 14 O -0.956 6.956 15 C -0.724 4.724 16 C -0.204 4.204 17 C 0.211 3.789 18 O -0.276 6.276 19 H 0.075 0.925 20 H 0.143 0.857 21 H 0.153 0.847 22 H 0.149 0.851 23 H 0.148 0.852 24 H 0.123 0.877 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.472 -7.666 -1.801 7.888 hybrid contribution 0.236 1.399 -0.636 1.554 sum 0.709 -6.267 -2.437 6.761 Atomic orbital electron populations 1.69856 1.06215 1.27471 1.47815 1.24925 0.94876 0.99549 0.93392 0.86419 0.79652 0.82651 0.78242 1.20440 1.21102 1.19754 1.20671 0.92938 0.88474 1.53826 0.91575 1.19128 0.92474 0.93378 0.95344 0.90332 1.30092 1.12193 1.16044 1.11386 1.08423 0.77248 0.78251 0.77456 1.93559 1.65098 1.86894 1.48105 1.93537 1.62805 1.52761 1.86535 1.30063 1.13808 1.05972 1.22527 1.22109 0.99618 0.92870 1.05777 1.25162 0.81163 0.84808 0.87771 1.90242 1.58364 1.36147 1.42880 0.92469 0.85676 0.84709 0.85103 0.85218 0.87746 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 11.70 55.43 0.65 -24.05 15 2 C 0.08 2.11 4.72 -17.82 -0.08 2.03 15 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.52 -13.54 8.17 -34.44 -0.28 -13.82 15 8 H 0.07 1.66 7.74 -52.49 -0.41 1.25 15 9 C 0.02 0.38 2.21 -92.88 -0.21 0.17 15 10 H 0.08 1.85 8.14 -51.93 -0.42 1.42 15 11 C -0.57 -9.72 5.59 37.21 0.21 -9.51 15 12 S 2.40 37.20 5.26 -107.50 -0.57 36.64 15 13 O -0.94 -17.35 17.96 -57.82 -1.04 -18.38 15 14 O -0.96 -16.63 18.10 -57.82 -1.05 -17.67 15 15 C -0.60 -7.91 6.37 37.22 0.24 -7.67 15 16 C -0.16 -2.73 5.94 -27.84 -0.17 -2.90 15 17 C 0.34 7.51 5.59 -29.06 -0.16 7.35 15 18 O -0.41 -10.58 15.19 6.00 0.09 -10.48 15 19 H 0.27 7.18 8.31 -40.82 -0.34 6.85 15 20 H 0.12 1.94 8.14 -51.93 -0.42 1.51 15 21 H 0.13 2.13 8.14 -51.93 -0.42 1.71 15 22 H 0.13 1.36 8.14 -51.93 -0.42 0.94 15 23 H 0.13 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.10 1.65 8.14 -51.93 -0.42 1.22 15 25 H 0.09 1.43 8.12 -51.93 -0.42 1.01 15 LS Contribution 230.68 15.07 3.48 3.48 Total: -1.00 -33.51 230.68 -6.41 -39.92 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -2.50 Total: -1.16 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -0.45 Total: -24.36 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.65 Total: -24.05 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -1.99 Total: -46.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 37.20 SS G_CDS: -0.57 Total: 36.64 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -33.51 -6.41 -39.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857702.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.351 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds