Wall clock time and date at job start Mon Mar 30 2020 02:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38782 * 119.77950 * 2 1 4 4 C 1.38083 * 120.70239 * 179.97438 * 3 2 1 5 5 C 1.38753 * 119.93566 * 0.02562 * 4 3 2 6 6 O 1.35106 * 132.63144 * 180.02562 * 5 4 3 7 7 C 1.35222 * 110.07888 * 179.97438 * 6 5 4 8 8 C 1.39444 * 125.61377 * 179.97438 * 7 6 5 9 9 H 1.07993 * 120.00270 * 188.35392 * 8 7 6 10 10 C 1.40157 * 119.99665 * 8.34695 * 8 7 6 11 11 N 1.30850 * 119.99741 * 192.28869 * 10 8 7 12 12 Si 1.86800 * 120.00111 * 12.01928 * 10 8 7 13 13 H 1.48502 * 109.46732 * 270.26987 * 12 10 8 14 14 H 1.48499 * 109.47108 * 30.27239 * 12 10 8 15 15 H 1.48503 * 109.46749 * 150.27290 * 12 10 8 16 16 C 1.39736 * 108.77491 * 0.24390 * 7 6 5 17 17 O 1.35597 * 126.80107 * 179.76316 * 16 7 6 18 18 C 1.40844 * 119.23458 * 359.97438 * 5 4 3 19 19 C 1.36612 * 119.78240 * 179.97438 * 2 1 3 20 20 H 1.08997 * 109.46607 * 89.99891 * 1 2 3 21 21 H 1.08995 * 109.46839 * 209.99741 * 1 2 3 22 22 H 1.08998 * 109.46871 * 330.00429 * 1 2 3 23 23 H 1.08005 * 119.65444 * 359.95654 * 3 2 1 24 24 H 1.07999 * 120.03325 * 179.97438 * 4 3 2 25 25 H 0.96999 * 119.99854 * 354.43870 * 11 10 8 26 26 H 0.96699 * 113.99541 * 90.01747 * 17 16 7 27 27 H 1.07999 * 120.12251 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.2046 0.0000 4 6 3.5770 1.2268 0.0005 5 6 4.2887 0.0357 0.0005 6 8 5.6113 -0.2400 0.0014 7 6 5.8067 -1.5780 0.0015 8 6 7.0457 -2.2177 0.0018 9 1 7.1011 -3.2877 -0.1340 10 6 8.2193 -1.4721 0.1783 11 7 9.3840 -2.0195 -0.0582 12 14 8.1203 0.3055 0.7438 13 1 8.0208 1.1966 -0.4400 14 1 6.9216 0.4861 1.6015 15 1 9.3399 0.6469 1.5192 16 6 4.5625 -2.2142 -0.0050 17 8 4.3336 -3.5506 -0.0114 18 6 3.5865 -1.1852 0.0005 19 6 2.1856 -1.1857 0.0005 20 1 -0.3632 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6471 2.1345 -0.0007 24 1 4.1024 2.1704 0.0001 25 1 9.4410 -2.9628 -0.2771 26 1 4.2643 -3.9420 0.8701 27 1 1.6441 -2.1201 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947923.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:06 Heat of formation + Delta-G solvation = -68.705408 kcal Electronic energy + Delta-G solvation = -14154.953624 eV Core-core repulsion = 11649.243858 eV Total energy + Delta-G solvation = -2505.709766 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.95272 -38.93437 -37.90365 -35.99596 -32.94753 -32.53740 -31.03696 -27.88251 -26.58611 -23.03466 -22.52243 -21.95720 -20.56562 -19.01236 -17.51671 -17.34154 -16.65584 -16.18670 -15.67322 -15.28191 -14.72608 -14.64978 -14.46022 -14.34278 -14.25725 -13.14795 -12.95263 -12.71007 -12.38200 -12.16696 -11.94981 -11.54769 -11.53022 -10.99017 -10.58225 -9.72126 -9.35782 -9.03595 -6.76517 0.22723 0.61648 1.16956 1.26295 1.57352 1.72329 2.05103 2.43292 2.78547 2.94992 3.71106 3.93718 4.12161 4.41742 4.52664 4.62863 4.68022 4.87249 4.93332 4.99796 5.12502 5.20495 5.27409 5.51786 5.58005 5.75053 5.81287 5.90197 6.08038 6.27889 6.61125 7.19609 7.63604 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.041676 B = 0.010249 C = 0.008340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.694541 B = 2731.256287 C = 3356.609719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.091 4.091 5 C -0.050 4.050 6 O -0.220 6.220 7 C 0.180 3.820 8 C -0.486 4.486 9 H 0.088 0.912 10 C 0.018 3.982 11 N -0.795 5.795 12 Si 1.101 2.899 13 H -0.261 1.261 14 H -0.262 1.262 15 H -0.255 1.255 16 C -0.238 4.238 17 O -0.466 6.466 18 C -0.083 4.083 19 C -0.145 4.145 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.164 0.836 24 H 0.143 0.857 25 H 0.291 0.709 26 H 0.354 0.646 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 6.731 2.452 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.164 4.164 4 C -0.110 4.110 5 C -0.095 4.095 6 O -0.125 6.125 7 C 0.130 3.870 8 C -0.513 4.513 9 H 0.106 0.894 10 C -0.202 4.202 11 N -0.416 5.416 12 Si 0.920 3.080 13 H -0.186 1.186 14 H -0.188 1.188 15 H -0.181 1.181 16 C -0.285 4.285 17 O -0.271 6.271 18 C -0.084 4.084 19 C -0.163 4.163 20 H 0.096 0.904 21 H 0.085 0.915 22 H 0.105 0.895 23 H 0.181 0.819 24 H 0.161 0.839 25 H 0.102 0.898 26 H 0.205 0.795 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.174 8.221 2.081 12.493 hybrid contribution -0.372 -2.586 0.006 2.613 sum -9.546 5.635 2.086 11.280 Atomic orbital electron populations 1.20763 0.88349 1.03637 1.03037 1.19826 0.97800 0.92011 0.98929 1.20948 0.91554 0.98698 1.05207 1.20246 0.94127 0.93867 1.02722 1.19963 0.81132 0.96530 1.11850 1.84144 1.24592 1.23969 1.79826 1.19897 0.95264 0.79217 0.92604 1.19949 0.89747 0.96855 1.44753 0.89402 1.28510 0.90464 1.10871 0.90380 1.70582 1.26809 1.15963 1.28274 0.83128 0.77134 0.68565 0.79141 1.18557 1.18758 1.18074 1.17959 0.89958 0.83643 1.36942 1.84777 1.93316 1.17276 1.31752 1.19149 0.95164 0.93263 1.00857 1.20210 0.90549 0.98774 1.06796 0.90379 0.91476 0.89480 0.81876 0.83920 0.89763 0.79457 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 10.00 71.24 0.71 -1.48 15 2 C -0.09 -2.74 5.84 -20.11 -0.12 -2.86 15 3 C -0.15 -4.47 9.67 22.36 0.22 -4.26 15 4 C -0.09 -3.38 10.07 22.36 0.23 -3.15 15 5 C -0.05 -2.40 7.36 23.03 0.17 -2.23 15 6 O -0.22 -11.42 6.03 -19.88 -0.12 -11.54 15 7 C 0.18 9.96 6.42 22.92 0.15 10.11 15 8 C -0.49 -27.03 9.66 23.03 0.22 -26.81 15 9 H 0.09 5.09 8.06 -2.91 -0.02 5.06 15 10 C 0.02 0.94 5.52 85.31 0.47 1.41 15 11 N -0.79 -41.18 13.66 21.87 0.30 -40.88 15 12 Si 1.10 47.80 26.38 68.60 1.81 49.61 15 13 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 14 H -0.26 -11.57 6.37 99.48 0.63 -10.94 15 15 H -0.26 -10.02 7.11 99.48 0.71 -9.32 15 16 C -0.24 -12.77 7.43 23.52 0.17 -12.59 15 17 O -0.47 -23.30 13.60 -89.07 -1.21 -24.51 15 18 C -0.08 -4.05 6.18 -21.31 -0.13 -4.18 15 19 C -0.14 -5.83 9.69 22.34 0.22 -5.61 15 20 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.07 1.38 8.08 -2.39 -0.02 1.36 15 22 H 0.09 1.45 8.08 -2.39 -0.02 1.43 15 23 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 24 H 0.14 4.40 8.06 -2.91 -0.02 4.38 15 25 H 0.29 14.69 8.73 -92.71 -0.81 13.88 15 26 H 0.35 14.46 9.06 -74.06 -0.67 13.79 15 27 H 0.12 4.35 8.06 -2.91 -0.02 4.33 15 Total: -1.00 -63.78 242.42 3.50 -60.29 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.42 Total: 18.68 kcal Atomic # 6 Polarization: -53.96 SS G_CDS: 2.31 Total: -51.65 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.30 Total: -40.88 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.33 Total: -36.05 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.81 Total: 49.61 kcal Total: -63.78 3.50 -60.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947923.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.420 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds