Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.34740 * 124.96591 * 269.69068 * 10 9 7 12 12 C 1.34797 * 110.90552 * 179.81520 * 11 10 9 13 13 C 1.38975 * 133.42523 * 180.13391 * 12 11 10 14 14 C 1.37830 * 119.82146 * 180.35898 * 13 12 11 15 15 C 1.38746 * 120.68260 * 359.97438 * 14 13 12 16 16 C 1.36740 * 120.41572 * 359.97438 * 15 14 13 17 17 C 1.39374 * 119.72325 * 0.02562 * 16 15 14 18 18 C 1.34278 * 124.97144 * 89.99920 * 10 9 7 19 19 O 1.36172 * 126.92738 * 0.03569 * 18 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08009 * 120.08778 * 0.38053 * 13 12 11 24 24 H 1.08000 * 119.65800 * 179.97438 * 14 13 12 25 25 H 1.07996 * 119.79411 * 179.97438 * 15 14 13 26 26 H 1.08002 * 120.13540 * 179.97438 * 16 15 14 27 27 H 0.96704 * 114.00091 * 89.97758 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 2.7276 -4.2305 -1.1171 12 6 3.5817 -5.2221 -0.7940 13 6 4.3433 -6.1094 -1.5449 14 6 5.1362 -7.0404 -0.9091 15 6 5.1836 -7.1021 0.4762 16 6 4.4428 -6.2374 1.2334 17 6 3.6351 -5.2891 0.6083 18 6 2.7302 -4.2345 1.0874 19 8 2.4547 -3.9192 2.3831 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 4.3142 -6.0694 -2.6239 24 1 5.7267 -7.7290 -1.4952 25 1 5.8096 -7.8375 0.9595 26 1 4.4829 -6.2897 2.3114 27 1 1.7037 -4.4022 2.7544 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260985381.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -23.279871 kcal Electronic energy + Delta-G solvation = -13866.908876 eV Core-core repulsion = 11363.168909 eV Total energy + Delta-G solvation = -2503.739967 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.91776 -37.57928 -36.77955 -33.40922 -31.45407 -30.33429 -29.92442 -26.83422 -23.68062 -22.42070 -21.29959 -20.41690 -17.84521 -16.69934 -16.61639 -15.77320 -15.29846 -15.02984 -14.44090 -13.88848 -13.50521 -13.17857 -12.71591 -12.37620 -11.99918 -11.88993 -11.54290 -11.03156 -10.85949 -10.77809 -10.20600 -9.71496 -9.58402 -9.32172 -8.52421 -8.29044 -7.43184 -6.14502 -4.19062 1.27467 1.63177 2.83658 3.25902 3.28964 3.34389 3.41218 3.96783 4.38705 4.57371 4.89170 5.11217 5.21455 5.30117 5.54281 5.65158 5.67629 6.01668 6.12137 6.50765 6.60506 6.68177 6.79848 6.85061 7.21713 7.26489 7.79898 7.82103 8.07722 8.25000 8.82330 9.44731 10.95165 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.045603 B = 0.007375 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.842586 B = 3795.729915 C = 3949.125579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.086 3.914 10 C 0.086 3.914 11 O -0.182 6.182 12 C 0.044 3.956 13 C -0.104 4.104 14 C -0.110 4.110 15 C -0.143 4.143 16 C -0.075 4.075 17 C -0.134 4.134 18 C -0.038 4.038 19 O -0.451 6.451 20 H 0.265 0.735 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.129 0.871 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 -12.224 0.411 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.049 3.951 10 C 0.037 3.963 11 O -0.084 6.084 12 C -0.003 4.003 13 C -0.123 4.123 14 C -0.128 4.128 15 C -0.161 4.161 16 C -0.093 4.093 17 C -0.135 4.135 18 C -0.085 4.085 19 O -0.256 6.256 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.147 0.853 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.413 -11.638 0.088 13.289 hybrid contribution 0.089 0.550 0.260 0.615 sum 6.503 -11.088 0.348 12.859 Atomic orbital electron populations 1.69935 1.06031 1.27273 1.49924 1.24959 0.94978 0.99393 0.94695 0.86398 0.79848 0.82444 0.78272 1.20425 1.20949 1.19635 1.20920 0.93270 0.89144 1.51992 0.92153 1.18181 0.90696 0.86347 0.99866 1.23999 0.95485 0.94627 0.82167 1.84184 1.49804 1.40316 1.34072 1.19538 0.95395 0.92352 0.93050 1.19900 0.97697 0.95192 0.99496 1.20777 0.99117 0.98348 0.94593 1.20665 1.01181 1.00397 0.93872 1.20205 0.95374 0.93935 0.99765 1.20212 1.01125 0.98432 0.93763 1.18510 1.04528 1.00212 0.85223 1.85002 1.53159 1.66089 1.21386 0.92532 0.92333 0.93946 0.85319 0.85347 0.85934 0.85996 0.77717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.22 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.52 -14.73 9.09 -34.44 -0.31 -15.04 15 8 H 0.06 1.75 7.74 -52.49 -0.41 1.35 15 9 C 0.09 2.23 5.43 -29.03 -0.16 2.07 15 10 C 0.09 2.01 6.44 -35.70 -0.23 1.78 15 11 O -0.18 -4.07 10.59 3.13 0.03 -4.03 15 12 C 0.04 0.85 7.41 -38.46 -0.29 0.57 15 13 C -0.10 -1.59 10.07 -39.46 -0.40 -1.99 15 14 C -0.11 -1.41 10.01 -39.54 -0.40 -1.81 15 15 C -0.14 -1.87 9.98 -39.94 -0.40 -2.27 15 16 C -0.07 -1.17 10.05 -39.70 -0.40 -1.57 15 17 C -0.13 -2.58 6.40 -105.08 -0.67 -3.26 15 18 C -0.04 -0.82 7.49 -37.44 -0.28 -1.10 15 19 O -0.45 -8.99 13.61 -20.29 -0.28 -9.27 15 20 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 21 H 0.06 1.54 8.14 -51.93 -0.42 1.11 15 22 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 24 H 0.13 1.19 8.06 -52.49 -0.42 0.77 15 25 H 0.12 1.21 8.06 -52.49 -0.42 0.79 15 26 H 0.12 1.69 8.06 -52.49 -0.42 1.26 15 27 H 0.37 5.37 9.07 45.56 0.41 5.78 15 LS Contribution 249.81 15.07 3.76 3.76 Total: -1.00 -31.63 249.81 -6.05 -37.68 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -1.66 Total: 1.34 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.63 Total: -20.97 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.24 Total: -13.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.63 -6.05 -37.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260985381.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.404 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds