Wall clock time and date at job start Mon Mar 30 2020 02:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.34740 * 124.96591 * 269.69068 * 10 9 7 12 12 C 1.34797 * 110.90552 * 179.81520 * 11 10 9 13 13 C 1.38975 * 133.42523 * 180.13391 * 12 11 10 14 14 C 1.37830 * 119.82146 * 180.35898 * 13 12 11 15 15 C 1.38746 * 120.68260 * 359.97438 * 14 13 12 16 16 C 1.36740 * 120.41572 * 359.97438 * 15 14 13 17 17 C 1.39374 * 119.72325 * 0.02562 * 16 15 14 18 18 C 1.34278 * 124.97144 * 89.99920 * 10 9 7 19 19 O 1.36172 * 126.92738 * 0.03569 * 18 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08009 * 120.08778 * 0.38053 * 13 12 11 24 24 H 1.08000 * 119.65800 * 179.97438 * 14 13 12 25 25 H 1.07996 * 119.79411 * 179.97438 * 15 14 13 26 26 H 1.08002 * 120.13540 * 179.97438 * 16 15 14 27 27 H 0.96704 * 114.00091 * 89.97758 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 2.7276 -4.2305 -1.1171 12 6 3.5817 -5.2221 -0.7940 13 6 4.3433 -6.1094 -1.5449 14 6 5.1362 -7.0404 -0.9091 15 6 5.1836 -7.1021 0.4762 16 6 4.4428 -6.2374 1.2334 17 6 3.6351 -5.2891 0.6083 18 6 2.7302 -4.2345 1.0874 19 8 2.4547 -3.9192 2.3831 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 4.3142 -6.0694 -2.6239 24 1 5.7267 -7.7290 -1.4952 25 1 5.8096 -7.8375 0.9595 26 1 4.4829 -6.2897 2.3114 27 1 1.7037 -4.4022 2.7544 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260985381.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:16 Heat of formation + Delta-G solvation = -45.049796 kcal Electronic energy + Delta-G solvation = -13867.852891 eV Core-core repulsion = 11363.168909 eV Total energy + Delta-G solvation = -2504.683982 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.40882 -38.82035 -38.37489 -35.50878 -32.97157 -32.02517 -31.21756 -28.56472 -25.56730 -23.77657 -22.69508 -22.01950 -19.28759 -18.75513 -18.01303 -17.41194 -16.86885 -16.65305 -15.99404 -15.24328 -14.82962 -14.58162 -14.53102 -14.36253 -13.60410 -13.22923 -13.06744 -12.83514 -12.68958 -12.27383 -12.03718 -11.73114 -11.23783 -10.74632 -10.68862 -9.57283 -8.96752 -8.28968 -6.44316 -0.01782 0.39246 1.26224 1.38354 1.38809 1.51181 1.78116 2.36868 2.76489 3.01108 3.11384 3.55566 4.02008 4.12232 4.23930 4.40004 4.49513 4.60692 4.87192 5.06317 5.11916 5.28322 5.33455 5.43922 5.51025 5.59295 5.84573 5.96140 6.24840 6.61184 6.81975 7.23700 8.79283 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.045603 B = 0.007375 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.842586 B = 3795.729915 C = 3949.125579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.046 0.954 9 C 0.097 3.903 10 C 0.037 3.963 11 O -0.205 6.205 12 C 0.016 3.984 13 C -0.117 4.117 14 C -0.086 4.086 15 C -0.128 4.128 16 C -0.082 4.082 17 C -0.164 4.164 18 C -0.027 4.027 19 O -0.466 6.466 20 H 0.271 0.729 21 H 0.045 0.955 22 H 0.019 0.981 23 H 0.150 0.850 24 H 0.178 0.822 25 H 0.168 0.832 26 H 0.139 0.861 27 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -13.981 0.524 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.065 0.935 9 C 0.060 3.940 10 C -0.011 4.011 11 O -0.108 6.108 12 C -0.030 4.030 13 C -0.135 4.135 14 C -0.103 4.103 15 C -0.146 4.146 16 C -0.100 4.100 17 C -0.165 4.165 18 C -0.073 4.073 19 O -0.275 6.275 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.038 0.962 23 H 0.168 0.832 24 H 0.195 0.805 25 H 0.186 0.814 26 H 0.156 0.844 27 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.883 -13.418 0.209 16.093 hybrid contribution -0.575 0.870 0.247 1.072 sum 8.308 -12.547 0.457 15.056 Atomic orbital electron populations 1.70030 1.07388 1.28521 1.50131 1.25848 0.95921 1.02921 0.93872 0.85363 0.78444 0.77991 0.78775 1.19343 1.19560 1.19587 1.21169 0.92839 0.90957 1.52805 0.93545 1.17764 0.90963 0.87261 0.98008 1.23401 0.97960 0.96145 0.83582 1.84066 1.51142 1.41715 1.33837 1.20247 0.95995 0.92683 0.94115 1.20415 0.97442 0.94876 1.00758 1.21436 0.96943 0.96890 0.95032 1.21242 0.99727 0.99584 0.94057 1.20565 0.94937 0.93438 1.01076 1.20345 1.02626 0.99585 0.93950 1.18782 1.03734 0.99874 0.84934 1.84884 1.54505 1.67218 1.20870 0.91995 0.93717 0.96237 0.83239 0.80460 0.81407 0.84351 0.74971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.11 13.29 21.45 0.28 -54.82 15 2 C 0.01 0.80 5.46 84.66 0.46 1.26 15 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.54 -32.40 9.09 25.60 0.23 -32.16 15 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15 9 C 0.10 5.40 5.43 29.10 0.16 5.56 15 10 C 0.04 1.86 6.44 24.78 0.16 2.02 15 11 O -0.20 -9.65 10.59 -11.71 -0.12 -9.78 15 12 C 0.02 0.63 7.41 23.00 0.17 0.80 15 13 C -0.12 -3.27 10.07 22.35 0.23 -3.04 15 14 C -0.09 -1.74 10.01 22.29 0.22 -1.51 15 15 C -0.13 -2.69 9.98 22.04 0.22 -2.47 15 16 C -0.08 -2.35 10.05 22.19 0.22 -2.13 15 17 C -0.16 -6.28 6.40 -20.16 -0.13 -6.41 15 18 C -0.03 -1.19 7.49 23.66 0.18 -1.02 15 19 O -0.47 -19.06 13.61 -95.51 -1.30 -20.36 15 20 H 0.27 15.04 8.31 -92.70 -0.77 14.27 15 21 H 0.04 2.53 8.14 -2.38 -0.02 2.51 15 22 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 23 H 0.15 3.45 8.06 -2.91 -0.02 3.43 15 24 H 0.18 1.96 8.06 -2.91 -0.02 1.94 15 25 H 0.17 2.08 8.06 -2.91 -0.02 2.06 15 26 H 0.14 3.41 8.06 -2.91 -0.02 3.39 15 27 H 0.39 11.71 9.07 -74.05 -0.67 11.04 15 Total: -1.00 -72.13 249.81 3.53 -68.60 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.52 Total: 8.21 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 2.12 Total: -39.10 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.42 Total: -30.13 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.13 3.53 -68.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260985381.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.551 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds